Job Description P02925 Confidence 98.02% Date Thu Jan 5 10:57:39 GMT 2012 Rank 81 Aligned Residues 206 % Identity 12% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.														.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	L	V	V	L	D	S	Q	.	.	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Alig confidence														.	.																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation														.	.
Template Sequence		K	V	A	V	V	T	Q	P	L	S	E	N	.	.	K	V	Q	Y	N	X	V	E	E	X	A	K	E	Y	E	E	E	N	K	I	D	K	T	K	V	K	Q	T	I	K	H	V	V	L	P	E	N	F	T	S	N	I	D	S	A	I	N	K	I	V	K	L	A	D	D	K	E	V	Q	A	I	V	V	S	T	D
Template Known Secondary structure										T	T	T		.	.																		T	T																	T	T	G	G	G	G										G	G	G	G		T	T									S
Template Predicted Secondary structure														.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		S	D	A	V	G	N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	.	.	.	.	.	.	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R
Query Conservation																															.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	G	L	L	P	A	L	Q	K	V	K	E	K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	V	N	L	G	V	S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	I	H	Y	A	S	T	D	D	L	K	D	V	N	I	A	K	R
Template Known Secondary structure		S															T	T	S					S	S			S									S	S																					T	T		S								T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.
Query Sequence		G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	.	.	.	.	.	.	.	.	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M
Query Conservation																																						.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V	Q	V	N	T	P	N	I	N	T	E	E	D	K	N	K	V	K	Q	F	L	N	E	D	I	E	K	Q	V	K	K	Y	G	K	D	I	N	V	F	G	V	N	E	Y	X	D	E	V	I	L	T	K	A	L	E	L	K	Y	I	V	A	E
Template Known Secondary structure												T	T												S	S	T																							S							S	S																	B	B
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions