Job Description P02925 Confidence 97.23% Date Thu Jan 5 10:57:39 GMT 2012 Rank 93 Aligned Residues 200 % Identity 11% Template c3q41B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) Resolution 3.40 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.							.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.																																	.	.	.	.
Query SS confidence																																.	.	.	.	.	.																																	.	.	.	.
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	.	.	.	.	.	.	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	.	.	.	.	P	T	D	S	D	A	V	G
Query Conservation																																.	.	.	.	.	.																																	.	.	.	.
Alig confidence									.	.																						.	.	.	.	.	.																																	.	.	.	.
Template Conservation									.	.
Template Sequence		N	I	G	A	V	L	S	.	.	T	R	K	H	E	Q	M	F	R	E	A	V	N	Q	A	N	K	R	H	G	S	W	K	I	Q	L	N	A	T	S	V	T	H	K	P	N	A	I	Q	M	A	L	S	V	C	E	D	L	I	S	S	Q	V	Y	A	I	L	V	S	H	P	P	T	P	N	D	H	F	T	P	T
Template Known Secondary structure								S	.	.	S																				S	S	S												S	S											T	T	G	G	G											S		T	T	T	T	T	T
Template Predicted Secondary structure									.	.
Template SS confidence
		28	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	.	.	.	.	.	.	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																								.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		P	V	S	Y	T	A	G	F	Y	R	I	P	V	L	G	L	T	T	R	M	S	I	Y	S	D	K	S	I	H	L	S	F	L	R	T	V	P	P	Y	S	H	Q	S	S	V	W	F	E	M	M	R	V	Y	N	W	N	H	I	I	L	L	V	.	.	.	.	S	D	D	H	E	G	R	A	A	Q	K	R	L	E
Template Known Secondary structure									T	T	T							S				G	G	G	G	S	S	S	S		T	T				S	S			G	G	G												B										.	.	.	.		S	S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	A	A	H	K	F	N	V	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		T	L	L	E	E	R	E	S	K	A	E	K	V	L	Q	F	D	P	G	T	K	N	V	T	A	L	L	M	E	A	R	E	L	E	A	R	.	V	I	I	L	S	A	S	E	D	D	A	A	T	V	Y	R	A	A	A	M	L	N	M	T	G	S
Template Known Secondary structure					T	T	S	S											T	T		S											T	S	S			.																				T	T	T		S	S	T
Template Predicted Secondary structure																																						.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions