Job Description P02925 Confidence 89.94% Date Thu Jan 5 10:57:39 GMT 2012 Rank 109 Aligned Residues 207 % Identity 9% Template c3om1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution Resolution 1.68 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.									.	.			.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.			.	.														.
Query SS confidence																													.	.	.	.	.	.	.	.			.	.														.
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	.	.	.	.	.	.	.	.	L	G	.	.	Y	N	L	V	V	L	D	S	Q	N	N	P	A	.	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V
Query Conservation																													.	.	.	.	.	.	.	.			.	.														.
Alig confidence								.																					.	.	.	.	.	.	.	.			.	.														.
Template Conservation								.
Template Sequence		R	M	A	A	I	L	.	D	D	Q	T	V	C	G	R	G	E	R	L	A	L	A	L	A	R	E	Q	I	N	G	I	I	E	V	P	A	K	A	R	V	E	V	D	I	F	E	L	Q	R	D	S	Q	Y	E	T	T	D	T	M	C	Q	I	L	P	K	G	V	V	S	V	L	G	P	S	S	S	P	A	S	A
Template Known Secondary structure								.		S		S	S	S	S																	S			S	S													S	S														G	G	G			S						S	S
Template Predicted Secondary structure								.
Template SS confidence
		6	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		G	N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	.	.	.	.	.	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																																			.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		S	T	V	S	H	I	C	G	E	K	E	I	P	H	I	K	V	G	P	E	E	T	P	R	L	Q	Y	L	R	F	A	S	V	S	L	Y	P	S	N	E	D	V	S	L	A	V	S	R	I	L	K	S	F	N	Y	P	S	A	S	L	I	C	.	.	.	.	A	K	A	E	C	L	L	R	L	E	E	L	V	R
Template Known Secondary structure												T							S				S	S			G	G	G	G	G	G					S																	T	T	S								.	.	.	.	S	S	T	T					T
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	A	A	H	K	F	N	V	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T	P	D
Query Conservation
Alig confidence																												.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		G	F	L	I	S	K	E	T	L	S	V	R	M	L	D	D	R	D	P	T	P	L	L	K	E	I	.	.	.	.	.	R	D	D	K	V	S	T	I	I	I	D	A	N	A	S	I	S	H	L	V	L	R	K	A	S	E	L	G	M	T	S	A	F	Y	K	Y	I	L	T	T	M	D
Template Known Secondary structure						S	S	S																				.	.	.	.	.				T								S															T	T	T	T	S	T	T								T	T
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions