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Job DescriptionP02925
Confidence100.00%DateThu Jan 5 10:57:39 GMT 2012
Rank8Aligned Residues272
% Identity22%Templatec3l49D_
PDB info PDB header:transport proteinChain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
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Query Sequence  AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM
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Template Sequence  SLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK
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   28.30.........40.........50.........60.........70.........80.........90.........100.......
 
   103......110.........120.........130.........140.........150.........160.........170........
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Query Sequence  ANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK. . . .
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Template Sequence  INDAGIPLFTVD. . TATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKI
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   108.110......... 120.........130.........140.........150.........160.........170.........180.....
 
   179180.........190.........200....... ..210.........220.........230.........240.........250. ..
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Query Sequence  FNVLASQPADFDRIKGLNVMQNLLTAHPD. . . VQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVND. . GK
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Template Sequence  IEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESP
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   186...190.........200.........210.........220.........230.........240.........250.........260.....
 
   254.....260.........270.........280.........290......
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Query Sequence  LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ
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Template Sequence  AGAVAAQQPSEIGKLAVQNVARHLAGQEVKPFTFAPAVLITKE
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   266...270.........280.........290.........300........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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