Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 11 Aligned Residues 268 % Identity 17% Template c3k4hA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 Resolution 2.80 Å

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		25	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		A	K	D	T	I	A	L	V	V	S	T	.	.	.	.	.	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																																																												.	.
Template Conservation																																																																													.	.
Template Sequence		T	T	K	T	L	G	L	V	X	P	S	S	A	S	K	A	F	Q	N	P	F	F	P	E	V	I	R	G	I	S	S	F	A	H	V	E	G	Y	A	L	Y	X	S	T	G	E	T	E	E	E	I	F	N	G	V	V	K	X	V	Q	G	R	Q	I	G	G	I	I	L	L	Y	S	R	E	N	.	.	D	R	I
Template Known Secondary structure											S	S						T	T	S	T																T	T										S														T	T								S			B	T	T	.	.
Template Predicted Secondary structure																																																																													.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F
Query Conservation
Alig confidence																																																			.	.
Template Conservation																																																			.	.
Template Sequence		I	Q	Y	L	H	E	Q	N	F	P	F	V	L	I	G	K	P	Y	D	R	K	D	E	I	T	Y	V	D	N	D	N	Y	T	A	A	R	E	V	A	E	Y	L	I	S	L	G	H	K	Q	.	.	I	A	F	I	G	G	G	S	D	L	L	V	T	R	D	R	L	A	G	X	S	D	A	L	K	L	A	D	I
Template Known Secondary structure								T	T							S			S	S		T	T	T	S																					T	T				.	.						S		T	T	B																	T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		N	V	.	.	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		V	L	P	K	E	Y	I	L	H	F	D	F	S	R	E	S	G	Q	Q	A	V	E	E	L	X	G	L	Q	Q	P	P	T	A	I	X	A	T	D	D	L	I	G	L	G	V	L	S	A	L	S	K	K	G	F	V	V	P	K	D	V	S	I	V	S	F	N	N	A	L	L	S	E	I	A	S	P	P	L	S	T
Template Known Secondary structure					G	G	G						S	S													T	S	S	S			S					S	S														T	T			T	T	T	T							S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		I	A	Q	L	P	D	Q	I	G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	.	Q	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		V	D	V	N	I	Y	Q	L	G	Y	E	A	A	K	A	L	V	D	K	V	E	N	A	E	S	T	A	K	C	I	I	I	P	H	K	L	L	K	R	Q
Template Known Secondary structure																									S																S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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