Job Description P02925 Confidence 96.01% Date Thu Jan 5 10:57:39 GMT 2012 Rank 102 Aligned Residues 207 % Identity 13% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.									.	.	.	.			60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.					.	.							.
Query SS confidence																														.	.	.	.	.	.	.	.					.	.							.
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	.	.	.	.	.	.	.	.	G	Y	N	L	.	.	V	V	L	D	S	Q	.	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V
Query Conservation																														.	.	.	.	.	.	.	.					.	.							.
Alig confidence																														.	.	.	.	.	.	.	.					.	.							.																				.
Template Conservation																																																																						.
Template Sequence		R	F	G	G	I	F	E	Y	V	E	S	G	P	M	G	A	E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	.	A	I	F	G	P	S	H	S	S	S	A
Template Known Secondary structure											T	T	S	S																			S	S	S	S	S	S												T	T																		S	.						S	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		G	N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	.	.	.	.	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.																																				.	.	.	.	.
Template Conservation																																																															.	.	.	.	.
Template Sequence		N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	N	K	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	Q	F	F	K	W	K	T	V	T	V	V	Y	.	.	.	.	.	D	D	S	T	G	L	I	R	L	Q	E	L	I	K
Template Known Secondary structure											T	T			B				S						S	S					S					S	B		T	T	T												T	T		S							.	.	.	.	.	S	S	T						S					T
Template Predicted Secondary structure																																																															.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	A	H	K	F	N	V	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		A	P	S	R	Y	N	L	R	L	K	I	R	Q	L	P	A	D	T	K	D	.	.	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F	T	T
Template Known Secondary structure		G	G	G	T	S	S										S	S	G	G	G	.	.											T	T								S																T			S	T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions