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Job DescriptionP02925
Confidence100.00%DateThu Jan 5 10:57:39 GMT 2012
Rank10Aligned Residues263
% Identity19%Templatec3h5oB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA
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Template Sequence  RTVLVLIPSLANTVFLETLTGIETVLDAAGYQXLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA. . EPFERILSQH
Template Known Secondary structure 
S
STT
TTTT

TT
TT

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   71........80.........90.........100.........110.........120.........130........ .140........
 
   107..110.........120.........130.........140.........150.........160.........170....... ..180...
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Query Sequence  NIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAH. . . KFNVLA
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Template Sequence  ALPVVYXXDL. . ADDGRCCVGFSQEDAGAAITRHLLSRGKRR. . . IGFLGAQLDERVXKRLDGYRAALDAADCRDAGLEW
Template Known Secondary structure  T

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TT

S...S

T


GGG
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   149150........ .160.........170.........180........ .190.........200.........210.........220...
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  SQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPD
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Template Sequence  LDPQPSSXQXGADXLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGFNDLQPAAWCTPPLTTVATPRR
Template Known Secondary structure 
S



TT

SSTT

TTTT

SB

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B

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   224.....230.........240.........250.........260.........270.........280.........290.........300...
 
   264.....270.........280.. .......290......
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Query Sequence  QIGAKGVETADKVLKGEKV. QAKYPVDLKLVVKQ
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Template Sequence  DIGVHAAKALLQLIDGEEPASRRADLGFRLXLRR
Template Known Secondary structure  TT


S
S




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   304.....310.........320.........330.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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