Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 44 Aligned Residues 269 % Identity 17% Template c3g1wB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans Resolution 2.02 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		D	T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	.	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		E	T	Y	X	X	I	T	F	Q	S	G	X	D	Y	W	K	R	C	L	K	G	F	E	D	A	A	Q	A	L	N	V	T	V	E	Y	R	G	A	A	Q	Y	D	I	Q	E	Q	I	T	V	L	E	Q	A	I	A	K	N	P	A	G	I	A	I	S	A	I	D	P	V	E	L	T	D	T	I	N	K	A	V	D
Template Known Secondary structure										S	T	T	S	T																	T									S	S	S																		S							S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	.	.	L	A
Query Conservation																																																																														.	.
Alig confidence																																													.																																	.	.
Template Conservation																																													.
Template Sequence		A	G	I	P	I	V	L	F	D	S	G	A	P	D	S	H	A	H	S	F	L	G	T	N	N	Y	N	A	G	X	N	A	A	Y	K	X	A	E	L	L	D	G	E	.	G	E	V	A	V	I	T	L	P	N	Q	L	N	H	Q	E	R	T	T	G	F	K	E	T	L	E	A	E	F	P	A	I	E	V	I	A
Template Known Secondary structure		T	T							S	S			T	T	S			S																						T	T	T		.									T	T																				T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	.	K	S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T	I	A	Q	L	P
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		V	E	D	G	R	G	D	S	L	H	S	R	R	V	A	H	Q	L	L	E	D	Y	P	N	L	A	G	I	F	A	T	E	A	N	G	G	V	G	V	G	D	A	V	R	L	E	S	R	A	G	E	I	Q	I	I	S	F	D	T	D	K	G	T	L	D	L	V	D	E	G	I	I	S	A	T	L	A	Q	G	T
Template Known Secondary structure						T	T																	T	T							S	S														T	T		T	T	T	S						S											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.											.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Q	I	G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	Q	.	.	.	.	.	.	.	.	.	.	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	N	X	G	Y	W	S	L	T	Y	L	F	H	L	H	H	G	L	T	E	P	Q	I	L	R	E	E	A	P	L	P	L	Y	V	D	T	G	I	T	I	V	T	D	E
Template Known Secondary structure																	T	T		S			B						B		S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions