Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 24 Aligned Residues 258 % Identity 16% Template c3d8uA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 Resolution 2.88 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q	A	N
Query Conservation
Alig confidence																																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		S	I	A	L	I	I	P	S	L	F	E	K	A	C	A	H	F	L	P	S	F	Q	Q	A	L	N	K	A	G	Y	Q	L	L	L	G	Y	S	D	Y	S	I	E	Q	E	E	K	L	L	S	T	F	L	E	S	R	P	A	G	V	V	L	F	G	S	E	H	S	.	.	Q	R	T	H	Q	L	L	E	A	S	N
Template Known Secondary structure								S		S	S																		T	S									T	T														T	S									S	S				.	.											T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L	A	.	.	S	Q
Query Conservation																																																																														.	.
Alig confidence																	.																										.	.																																		.	.
Template Conservation																	.																										.	.
Template Sequence		T	P	V	L	E	I	A	E	L	S	S	K	A	S	Y	.	L	N	I	G	V	D	H	F	E	V	G	K	A	C	T	R	H	L	I	E	Q	G	F	K	N	.	.	V	G	F	I	G	A	R	G	N	H	S	T	L	Q	R	Q	L	H	G	W	Q	S	A	X	I	E	N	Y	L	T	P	D	H	F	L	T	T
Template Known Secondary structure								S	S	S		S	S	S	S	S	.					B															T	T	T				.	.							S		S	S																	T	T
Template Predicted Secondary structure																	.																										.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T	I	A	Q	L	P	D	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	E	A	P	S	S	Q	L	G	A	E	G	L	A	K	L	L	L	R	D	S	S	L	N	A	L	V	C	S	H	E	E	I	A	I	G	A	L	F	E	C	H	R	R	V	L	K	V	P	T	D	I	A	I	I	C	L	E	G	S	S	X	G	E	H	A	Y	P	S	L	T	S	A	E	F	D	Y	E	R	X
Template Known Secondary structure		S	S																T	T		T	T							S	S														T	T			T	T	T	T						S	S							T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	Q	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation
Alig confidence																		.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.
Template Sequence		G	T	K	A	A	E	K	L	L	H	A	I	K	G	E	S	.	.	.	.	.	.	X	G	F	K	L	K	R	R	A
Template Known Secondary structure														S				.	.	.	.	.	.	B								T
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.							.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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