Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 21 Aligned Residues 261 % Identity 23% Template c3ctpB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose Resolution 1.41 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.
Template Sequence		S	K	T	I	G	L	M	V	P	N	I	S	N	P	F	F	N	Q	M	A	S	V	I	E	E	Y	A	K	N	K	G	Y	T	L	F	L	C	N	T	D	D	D	K	E	K	E	K	T	Y	L	E	V	L	Q	S	H	R	V	A	G	I	I	A	S	R	S	Q	C	E	.	.	.	.	.	.	D	E	Y	A	N
Template Known Secondary structure										S		T	T	S																	T	T									T	T															T	T		S						S				S	.	.	.	.	.	.	G	G	G	T	T
Template Predicted Secondary structure																																																																							.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L	A	S	Q
Query Conservation
Alig confidence																.	.																												.	.
Template Conservation																.	.																												.	.
Template Sequence		I	D	I	P	V	V	A	F	E	N	H	I	L	D	.	.	N	I	I	T	I	S	S	D	N	Y	N	G	G	R	M	A	F	D	H	L	Y	E	K	G	C	R	K	.	.	I	L	H	I	K	G	P	E	V	F	E	A	T	E	L	R	Y	K	G	F	L	D	G	A	R	A	K	D	L	E	I	D	F	I	E
Template Known Secondary structure				S						S	S				T	.	.	T	S																					T	T			S	.	.								T	T																		T	T
Template Predicted Secondary structure																.	.																												.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T	I	A	Q	L	P	D	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Q	H	D	F	Q	V	K	M	L	E	E	D	I	N	S	M	K	D	I	V	N	Y	D	G	I	F	V	F	N	D	I	A	A	A	T	V	M	R	A	L	K	K	R	G	V	S	I	P	Q	E	V	Q	I	I	G	F	D	N	S	F	I	G	E	L	L	Y	P	S	L	T	T	I	N	Q	P	I	E	A	L
Template Known Secondary structure			S	S	S			G	G	G	G	G				T	T	G	G	G	G	G	G	S	S					S	S														T	T			T	T	T	T						S	B			T					S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	.	Q	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		A	Y	T	I	I	E	L	L	I	K	I	I	N	G	E	G	V	L	I	E	D	Y	I	M	E	V	K	L	I	E	R	E
Template Known Secondary structure															T																		S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions