Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 31 Aligned Residues 273 % Identity 26% Template c2rjoA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans Resolution 2.05 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		M	A	K	D	T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	.	.	N	P	T	D	S	D	A	V	G	N	A	V	K
Query Conservation																																																																			.	.
Alig confidence																																																																			.	.
Template Conservation
Template Sequence		L	G	Q	T	T	L	A	C	S	F	R	S	L	T	N	P	Y	Y	T	A	F	N	K	G	A	Q	S	F	A	K	S	V	G	L	P	Y	V	P	L	T	T	E	G	S	S	E	K	G	I	A	D	I	R	A	L	L	Q	K	T	G	G	N	L	V	L	N	V	D	P	N	D	S	A	D	A	R	V	I	V	E
Template Known Secondary structure												S		T	T	S																		T									T	T																T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	.	.	.	.	.	.	.	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V
Query Conservation																							.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	C	S	K	A	G	A	Y	V	T	T	I	W	N	K	P	K	D	L	H	P	W	D	Y	N	P	N	Y	V	A	H	L	S	Y	D	G	V	A	Y	G	E	E	T	A	T	Q	L	F	K	S	X	G	G	K	G	G	V	V	A	L	G	G	I	F	S	N	V	P	A	I	E	R	K	A	G	L	D	A	A	L
Template Known Secondary structure							T							S				T	T			G	G	G	G	T	T	T																								T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		175	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure					.																									.																																.
Query SS confidence					.																									.																																.
Query Sequence		A	A	H	.	K	F	N	V	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	.	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	.	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D
Query Conservation					.																									.																																.
Alig confidence					.																									.																																.
Template Conservation
Template Sequence		K	K	F	P	G	I	Q	L	L	D	F	Q	V	A	D	W	N	S	Q	K	A	F	P	I	X	Q	A	W	X	T	R	F	N	S	K	I	K	G	V	W	A	A	N	D	D	X	A	L	G	A	I	E	A	L	R	A	E	G	L	A	G	Q	I	P	V	T	G	X	D	G	T	Q	P	G	L	V	A	I	K	S
Template Known Secondary structure			T		T	T										T	T																	G	G	G							S	S														T	T		B	T	T	B					S	B											T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.								.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		G	K	L	A	A	T	I	A	Q	L	P	D	Q	I	G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	Q	.	.	.	.	.	.	.	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	L	V	A	S	V	D	W	D	P	F	W	L	G	G	I	G	L	S	X	G	L	Q	A	K	E	K	K	I	D	L	A	T	L	P	K	D	R	R	E	S	F	C	T	A	T	F	V	T	K	T
Template Known Secondary structure		T	S			B																						T	T		S		G	G	G	S		G	G	G	T											T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions