Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 49 Aligned Residues 261 % Identity 22% Template c2qu7B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.30 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	D	T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N
Query Conservation
Alig confidence													.																																																																.	.	.	.
Template Conservation													.																																																																.	.	.	.
Template Sequence		R	S	N	I	I	A	F	I	V	P	D	.	Q	N	P	F	F	T	E	V	L	T	E	I	S	H	E	C	Q	K	H	H	L	H	V	A	V	A	S	S	E	E	N	E	D	K	Q	Q	D	L	I	E	T	F	V	S	Q	N	V	S	A	I	I	L	V	P	V	K	S	K	F	Q	M	K	R	.	.	.	.	E
Template Known Secondary structure											S	S	.																	G	G	G	T									T	T															T	T									S	S	S	S					G	.	.	.	.	G
Template Predicted Secondary structure													.																																																																.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L	.	.
Query Conservation																																																																																.	.
Alig confidence																			.																											.	.																																	.	.
Template Conservation																			.																											.	.
Template Sequence		W	L	K	I	P	I	M	T	L	D	R	E	L	E	S	T	S	.	L	P	S	I	T	V	D	N	E	E	A	A	Y	I	A	T	K	R	V	L	E	S	T	C	K	E	.	.	V	G	L	L	L	A	N	P	N	I	S	T	T	I	G	R	K	N	G	Y	N	K	A	I	S	E	F	D	L	N	V	N	P	S
Template Known Secondary structure		G	T	T	S						S	S			T	T			.																					T	T	T			S	.	.								T	T	S																	T	T					G	G
Template Predicted Secondary structure																			.																											.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
								183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																							.	.
Template Conservation																														.	.
Template Sequence		L	I	H	Y	S	D	Q	Q	L	G	T	N	A	Q	I	Y	S	G	Y	E	A	T	K	T	L	L	S	K	.	.	G	I	K	G	I	V	A	T	N	H	L	L	L	L	G	A	L	Q	A	I	K	E	S	E	K	E	I	K	K	D	V	I	I	V	G	F	D	D	S	Y	W	N	E	I	Y	T	P	K	L	T
Template Known Secondary structure		G						S	S		S																		T	.	.	T								S														S	S			B	T	T	T	B						S								S	S	S
Template Predicted Secondary structure																														.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	Q	L	P	D	Q	I	G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	Q	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		V	I	S	Q	P	V	K	E	M	G	Q	V	A	A	K	M	I	Y	K	L	I	K	G	K	D	V	T	.	S	I	K	L	S	T	K	L	I	I	R	E
Template Known Secondary structure																							T	T					.												S
Template Predicted Secondary structure																													.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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