Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 52 Aligned Residues 247 % Identity 21% Template c2h0aA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus Resolution 2.80 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q	A	N
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		T	V	S	V	L	L	P	F	V	A	T	E	F	Y	R	R	L	V	E	G	I	E	G	V	L	L	E	Q	R	Y	D	L	A	L	F	P	I	L	S	L	A	R	.	.	.	.	.	.	.	.	.	L	K	Y	L	T	D	G	L	I	L	A	S	Y	D	L	T	R	L	.	.	.	.	.	.	.	.	P	T	E
Template Known Secondary structure										S																	G	G	G	T										S				.	.	.	.	.	.	.	.	.						S						S							.	.	.	.	.	.	.	.	S		S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	.	.	L	A	S	Q
Query Conservation																																																																												.	.
Alig confidence														.	.	.																																																												.	.
Template Conservation														.	.	.
Template Sequence		R	P	V	V	L	V	D	A	Q	N	P	R	.	.	.	Y	D	S	V	Y	L	D	N	R	L	G	G	R	L	A	G	A	Y	L	A	R	F	P	G	P	I	F	A	I	A	V	E	E	E	P	D	R	R	T	V	F	A	E	R	M	A	G	F	Q	E	A	L	K	E	A	G	R	P	F	S	P	D	R	L	Y
Template Known Secondary structure		S						S	S			T	T	.	.	.	S							S												T	T	S	S	S										S																					T	T					G	G	G
Template Predicted Secondary structure														.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T	I	A	Q	L	P	D	Q	I
Query Conservation
Alig confidence																																																																			.	.
Template Conservation																																																																			.	.
Template Sequence		I	T	R	H	S	Q	E	G	G	R	L	A	L	R	H	F	L	E	K	A	S	P	P	L	N	V	F	A	G	A	D	Q	V	A	L	G	V	L	E	E	A	V	R	L	G	L	T	P	G	R	D	V	R	V	L	G	F	D	G	H	P	F	A	E	E	.	.	A	G	L	S	T	I	A	Q	P	V	E	A	M
Template Known Secondary structure					S	S													T	T			S	S						S	S													T	T	S		T	T	T	T	S							S			T					.	.		T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	.	Q	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		G	A	R	A	A	Q	L	L	L	E	R	M	R	G	Y	Q	G	P	P	R	E	V	R	F	E	P	V	L	V	E	R	A
Template Known Secondary structure														T	T			S	S														T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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