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Job DescriptionP02925
Confidence99.79%DateThu Jan 5 10:57:39 GMT 2012
Rank70Aligned Residues244
% Identity13%Templatec2fqxA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30....... ..40.........50.........60.........70.........80.........90.........100....
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Query Sequence  TIALVVSTLN. . . NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN
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Template Sequence  VVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTD. AEYVPSLSAFADENMGLVVACGSFLVEAVIETSARF
Template Known Secondary structure  SSS
TTSSSTT


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   21........30.........40.........50.........60... ......70.........80.........90.........
 
   105....110.........120.........130.........140...... ...150.........160.........170.........180...
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Query Sequence  QANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG. EGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLA
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Template Sequence  P. KQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQV
Template Known Secondary structure  T.TS
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   100 .........110.........120.........130.........140.........150.........160.........170........
 
   184.. ...190.........200.........210.........220.........230 .........240.........250... ...
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Query Sequence  SQP. . . ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAG. . KSDVMVVGFDGTPDGEKAVNDGK. . LAA
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Template Sequence  VVEVANTFSDPQKGQALAAKLYDS. . GVNVIFQVAGGTGNGVIKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLT
Template Known Secondary structure 
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   179180.........190.........200.. .......210.........220.........230.........240.........250......
 
   257..260.........270.....
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Query Sequence  TIAQLPDQIGAKGVETADK
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Template Sequence  SMVKRADVAAERISKMAYD
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   257..260.........270.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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