 |
Job Description | P02925 | Confidence | 54.90% | Date | Thu Jan 5 10:57:39 GMT 2012 |
Rank | 145 | Aligned Residues | 91 |
% Identity | 11% | Template | c2dgdD_ |
PDB info |
PDB header:lyase | Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; |
PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii
|
Resolution | 2.90 Å |
|
 |
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
. | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
Query Sequence |   |
V | S | A | N | A | M | A | K | D | T | I | A | L | V | V | S | T | L | N | N | P | F | F | V | S | L | K | D | G | A | Q | K | E | A | D | K | L | G | Y | N | L | V | V | L | D | S | Q | N | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | A | K | E | L | A | N | V | Q | D | L | T | V | R | . |
. |
G | T | K | I | L |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |
|   |   |
|
|   |
|
|
|
| . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
Template Sequence |   |
E | L | L | K | K | L | N | V | R | K | L | W | I | G | T | P | . |
. |
. |
. |
. |
Y | I | K | E | R | T | L | E | E | V | E | W | W | R | N | K | G | F | E | I | V | G | Y | D | G | L | G | K | I | R | G | I | D | I | S | N | T | P | I | F | T | I | Y | R | L | V | K | R | H | L | N | E | V | L | K | A | D | A | V |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
|
|  |  |  |  |  |  | S | . | . | . | . | . | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  |
|
|
|
| S |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | T | T | S | S |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
101 | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
  |
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | N | P | T | D | S | D | A | V | G | N | A | V | K | M | A | N | Q | A | N | I | P | V | I | T | L | D |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|
Template Sequence |   |
Y | I | A | C | T | A | L | S | T | Y | E | A | V | Q | Y | L | H | E | D | L | D | X | P | V | V | S | E | N |
Template Known Secondary structure |   |
 |  |
|
| T | T | S |
|
| T | T |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|