Job Description P02925 Confidence 100.00% Date Thu Jan 5 10:57:39 GMT 2012 Rank 3 Aligned Residues 291 % Identity 16% Template c1zvvA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex Resolution 2.98 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		N	M	K	K	L	A	T	L	V	S	A	V	A	L	S	A	T	V	S	A	N	A	M	.	.	.	A	K	D	T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		T	R	K	K	V	L	E	T	I	E	R	L	G	Y	R	P	N	A	V	A	R	G	L	A	S	K	K	T	T	T	V	G	V	I	I	P	D	I	S	N	I	F	Y	A	E	L	A	R	G	I	E	D	I	A	S	M	Y	K	Y	N	I	I	L	S	N	S	D	Q	N	Q	D	K	Q	L	H	L	L	N	N	M
Template Known Secondary structure														T													T			S							S		T	T	S																	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A
Query Conservation
Alig confidence																		.	.																			.																																				.
Template Conservation																		.	.																			.																																				.
Template Sequence		L	G	K	Q	V	D	G	I	I	F	M	S	G	N	V	T	.	.	E	E	H	V	E	E	L	K	K	S	P	V	P	V	V	L	A	A	.	S	I	E	S	T	N	Q	I	P	S	V	T	I	D	Y	E	Q	A	A	F	D	A	V	Q	S	L	I	D	S	G	H	K	N	I	A	.	F	V	S	G	T	L	E
Template Known Secondary structure					T		S							S				.	.								T	T		S	S						S	.				T	T			S																					T	T						.				S		T	T
Template Predicted Secondary structure																		.	.																			.																																				.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L	A	.	.	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		E	P	I	N	H	A	K	K	V	K	G	Y	K	R	A	L	T	E	S	G	L	P	V	R	D	S	Y	I	V	E	G	D	Y	T	Y	D	S	G	I	E	A	V	E	K	L	L	E	E	D	E	K	P	T	A	I	F	V	G	T	D	E	M	A	L	G	V	I	H	G	A	Q	D	R	G	L	N	V	P	N	D
Template Known Secondary structure		S					T	T													T					T	T	S						S	S													S	S	S	S			S					S	S														T	T			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T	I	A	Q	L	P	D	Q	I	G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	.	Q	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		L	E	I	I	G	F	D	N	T	R	L	S	T	M	V	R	P	Q	L	T	S	V	V	Q	P	M	Y	D	I	G	A	V	A	M	R	L	L	T	K	Y	M	N	K	E	T	V	D	S	S	I	V	E	L	P	H	R	I	E	F	R	Q
Template Known Secondary structure											T	T	T	T	T	S	S	S																									T					S		S	S											T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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