Job Description P0A6P5 Confidence 99.50% Date Thu Jan 5 11:03:38 GMT 2012 Rank 215 Aligned Residues 162 % Identity 20% Template c3tw8B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-35; PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35 Resolution 2.10 Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	I	K	L	A	I	V	G	R	P	N	V	G	K	S	T	L	T	N	R	I	L	G	E	E	R	V	V	V	Y	D	M	P	G	T	T	R	D	S	I	Y	I	P	M	E	R	D	G	R	E	Y	V	L	I	D	T	A	G	V	R	K	R	G	K	I	T	D	A	V	E	K	F	S	V	I	K	T	L
Query Conservation
Alig confidence																														.	.																																											.	.	.	.	.	.	.	.
Template Conservation																														.	.																																											.	.	.	.	.	.	.	.
Template Sequence		D	H	L	F	K	L	L	I	I	G	D	S	G	V	G	K	S	S	L	L	L	R	F	A	D	N	T	S	.	.	Y	I	T	T	I	G	V	D	F	K	I	R	T	V	E	I	N	G	E	K	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	T	I	T	S	T	Y	Y	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T	S											S				.	.		T	T	T	T	S											T	T											T	T	G	G	G		S	S			G	G	G	G	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.																																											.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		Q	A	I	E	D	A	N	V	V	M	L	V	I	D	A	R	E	G	I	S	D	Q	D	L	S	L	L	G	F	I	L	N	S	.	.	.	G	R	S	L	V	I	V	V	N	K	W	D	G	L	S	Q	E	V	K	E	Q	V	K	E	T	L	D	F	R	L	G	F	I	D	F	A	R	V	H	F	I	S	A	L
Query Conservation																																			.	.	.
Alig confidence		.	.	.																															.	.	.														.	.	.
Template Conservation		.	.	.																																															.	.	.
Template Sequence		.	.	.	R	G	T	H	G	V	I	V	V	Y	D	V	T	S	A	E	S	F	V	N	V	K	R	W	L	H	E	I	N	Q	N	C	D	D	V	C	R	I	L	V	G	N	K	N	D	D	.	.	.	P	E	R	K	V	V	E	T	E	D	A	Y	K	F	A	G	Q	M	G	I	Q	L	F	E	T	S	A	K
Template Known Secondary structure		.	.	.	T	T		S								T	T																				T	T	S									T	T		.	.	.	G	G	G			S													T							B	T	T
Template Predicted Secondary structure		.	.	.																																															.	.	.
Template SS confidence
					79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	S	G	V	G	N	L	F	E	S	V	R	E	A	Y	D	S	S	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	V	N	V	E	E	M	F	N	C	I	T	E	L	V	L	R	A	K	K
Template Known Secondary structure		T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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