Job Description P0A6P5 Confidence 99.93% Date Thu Jan 5 11:03:38 GMT 2012 Rank 25 Aligned Residues 158 % Identity 25% Template c3degC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp Resolution NULL Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.															.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Query Sequence		S	L	P	I	K	L	A	I	V	G	R	P	N	V	G	K	S	T	L	T	N	R	I	L	G	E	E	R	V	V	V	Y	D	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	R	D	S	I	Y	I	P	M	E	R	D	.	.	.	.	.	G	R	E	Y	V	L	I	D	T	A	G	V
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		K	N	I	R	N	F	S	I	I	A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G	H
Template Known Secondary structure		T	T										S	S	S	S	S	S										S	S			S	S				S	S	S			S	S	S							T	S		S	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	R	G	K	I	T	D	A	V	E	K	F	S	V	I	K	T	L	Q	A	I	E	D	A	N	V	V	M	L	V	I	D	A	R	E	G	I	S	D	Q	D	L	S	L	L	G	F	I	L	N	S	G	R	S	L	V	I	V	V	N	K	W	D	G	L	S	Q	E	V	K	E	Q	V	K	E	T	L	D	F
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Sequence		V	D	F	S	Y	E	.	.	.	.	.	.	.	.	.	.	.	V	S	R	S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	.	P	E	R	V	A	E	E	I	E	D
Template Known Secondary structure		S	T	T				.	.	.	.	.	.	.	.	.	.	.						T	T		S								T	T	T				T												T	T										T	T	S	T	T			.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																																																					.
Template SS confidence
		82	.	.	.	.	.												.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	F	I	D	F	A	R	V	H	F	I	S	A	L	H	G	S	G	V	G	N	L	F	E	S	V	R	E
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		I	V	G	I	.	D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q	D	V	L	E	R	L	V	R
Template Known Secondary structure			T			.			T	T						T	T	T		T	T
Template Predicted Secondary structure						.
Template SS confidence
		150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions