Job Description P0A6P5 Confidence 99.84% Date Thu Jan 5 11:03:38 GMT 2012 Rank 72 Aligned Residues 180 % Identity 21% Template c3agqA_ PDB info PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Resolution 3.22 Å

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		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	E	E	N	G	E	E	E	E	E	D	D	F	D	P	Q	S	L	P	I	K	L	A	I	V	G	R	P	N	V	G	K	S	T	L	T	N	R	I	L	G	E	E	R	V	V	V	Y	D	M	P	G	T	T	R	D	S	I	Y	I	P	M	E	R	D	G	R	E	Y	V	L	I	D	T	A	G	V	R	K
Query Conservation
Alig confidence																																													.	.	.	.										.	.	.
Template Conservation																																													.	.	.	.										.	.	.
Template Sequence		A	E	V	A	A	M	S	K	Q	S	H	M	S	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	.	.	.	.	L	A	K	T	Y	G	G	T	S	.	.	.	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	H	A	D
Template Known Secondary structure						T	T	T	T	T	G	G	G						S											T	T	S	S												.	.	.	.	T	T	T	T	S					.	.	.							S	S
Template Predicted Secondary structure																																													.	.	.	.										.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																							.												.
Query SS confidence																																																							.												.
Query Sequence		R	G	K	I	T	D	A	V	E	K	F	S	V	I	K	T	L	Q	A	I	E	D	A	N	V	V	M	L	V	I	D	A	R	E	G	I	S	D	Q	D	L	S	L	L	G	F	I	L	N	S	G	R	S	.	L	V	I	V	V	N	K	W	D	G	L	.	S	Q	E	V	K	E	Q	V	K	E	T	L	D	F
Query Conservation																																																							.												.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																																										.												.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	.	.	.	.	.	.	.	.	.	.	.	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.							T	S				S								T	T	T		S		G	G	G										T	T		S										T	T		S		T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		372												.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		341	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure									.	.	.	.												.
Query SS confidence									.	.	.	.												.
Query Sequence		R	L	G	F	I	D	F	.	.	.	.	A	R	V	H	F	I	S	A	L	H	G	.	S	G	V	G	N	L	F	E	S	V	R	E	A	Y	D	S	S	T	R	R	V	G
Query Conservation									.	.	.	.												.
Alig confidence									.	.	.	.												.
Template Conservation
Template Sequence		L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P
Template Known Secondary structure			T	G	G	G	T	S		T	T	T								T	T	T	T	T	T	T																		T	S
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions