Job Description P0A6P5 Confidence 99.77% Date Thu Jan 5 11:03:38 GMT 2012 Rank 106 Aligned Residues 164 % Identity 16% Template c2rexD_ PDB info PDB header:signaling protein/lipoprotein Chain: D: PDB Molecule:rho-related gtp-binding protein rho6; PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	Q	S	L	P	I	K	L	A	I	V	G	R	P	N	V	G	K	S	T	L	T	N	R	I	L	G	E	E	R	V	V	V	Y	D	M	P	G	T	T	R	D	S	I	Y	I	P	M	E	R	D	G	R	E	Y	V	L	I	D	T	A	G	V	R	K	R	G	K	I	T	D	A	V	E	K	F	S	V	I
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Q	P	V	V	A	R	C	K	L	V	L	V	G	D	V	Q	C	G	K	T	A	M	L	Q	V	L	A	K	D	C	Y	P	E	T	Y	V	P	T	V	F	E	N	Y	T	A	C	L	E	T	E	E	Q	R	V	E	L	S	L	W	D	T	S	G	S	P	Y	Y	D	N	V	R	P	L	C	Y	.	.	.	.	.
Template Known Secondary structure				S											S	T	T	S	S											S					S					S											S	S													S	G	G	G	T	T	T	G	G	G	G	G	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.											.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																						.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	L	Q	A	I	E	D	A	N	V	V	M	L	V	I	D	A	R	E	G	I	S	D	Q	D	L	S	L	L	G	F	I	L	N	S	.	.	G	R	S	L	V	I	V	V	N	K	W	D	G	L	S	Q	E	V	K	E	Q	V	.	.	.	.	.	.	.	.	.	.	K	E	T	L	D	F	R	L	G	F
Query Conservation																																						.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																															.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	S	D	S	D	A	V	L	L	C	F	D	I	S	R	P	E	T	V	A	L	K	K	W	R	T	E	I	L	D	Y	C	P	S	T	R	V	L	L	I	G	C	K	T	D	L	R	T	D	L	S	T	L	M	E	L	S	H	Q	K	Q	A	P	I	S	Y	E	Q	G	C	A	I	A	K	Q
Template Known Secondary structure		.	.	.	.	.	.	T	T		S								T	T		T	T	T															T	T	S									G	G	G	G	G											T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		I	D	F	A	R	V	H	F	I	S	A	L	H	G	S	.	G	V	G	N	L	F	E	S	V	R	E	A
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		L	G	A	E	I	Y	L	E	G	S	A	F	T	S	E	K	S	I	H	S	I	F	R	T	A	S	M	L
Template Known Secondary structure		T	T		S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions