Job Description P0A6P5 Confidence 98.61% Date Thu Jan 5 11:03:38 GMT 2012 Rank 288 Aligned Residues 145 % Identity 30% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.													.	.	.	.	.	40	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	A	L	V	G	R	P	N	V	G	K	S	T	L	F	N	R	L	T	.	.	.	.	.	.	R	T	R	D	A	L	V	A	D	F	P	.	.	.	.	.	.	.	.	.	.	.	.	G	L	T	R	D	R	K	Y	G	R	A	E	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E
Template Known Secondary structure									T	T	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	E	F	I	C	I	D	T	G	G	I	D	G	T	E	D	G	V	E	T	R	M	A	E	Q	S	L	L	A	I	E	E	A	D	V	V	L	F	M	V	D	A	R	A	G	L	M	P	A	D	E	A	I	A	K	H	L	R	S	R	E	K	P	T	F	L	V	A	N	K	T	D	G	L	D	P	D	Q	A
Query Conservation
Alig confidence																										.	.																						.	.
Template Conservation																										.	.																						.	.
Template Sequence		A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	.	.	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	.	.	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K	L	D	G	D	A	R	G	G	A
Template Known Secondary structure		T		S										S	S											.	.									S								S	S	S		S	.	.													S										S	S	S		S
Template Predicted Secondary structure																										.	.																						.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	D	F	Y	S	L	G	L	G	E	I	Y	P	I	A	A	S	H	G	R	G	V	L	S	L
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		A	L	S	A	R	H	V	T	G	K	P	I	Y	F	A	.	.	G	V	S	E	K	P	E	G	L
Template Known Secondary structure									S							B	.	.				S	S	G	G	G
Template Predicted Secondary structure																	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions