Job Description P0A6P5 Confidence 99.43% Date Thu Jan 5 11:03:38 GMT 2012 Rank 241 Aligned Residues 156 % Identity 18% Template c1z06A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein rab-33b; PDBTitle: gppnhp-bound rab33 gtpase Resolution 1.81 Å

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		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	I	K	L	A	I	V	G	R	P	N	V	G	K	S	T	L	T	N	R	I	L	G	E	E	R	V	V	V	Y	D	M	P	G	T	T	R	D	S	I	Y	I	P	M	E	R	D	G	R	E	Y	V	L	I	D	T	A	G	V	R	K	R	G	K	I	T	D	A	V	E	K	F	S	V	I	K	T	L	Q
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		R	I	F	K	I	I	V	I	G	D	S	N	V	G	K	T	C	L	T	Y	R	F	C	A	G	R	F	P	D	R	T	E	A	T	I	G	V	D	F	R	E	R	A	V	D	I	D	G	E	R	I	K	I	Q	L	W	D	T	A	G	Q	E	R	F	R	K	S	M	V	Q	H	Y	Y	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	S	S											S	S			S	S						S											T	T													S					T	T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.						.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		A	I	E	D	A	N	V	V	M	L	V	I	D	A	R	E	G	I	S	D	Q	D	L	S	L	L	G	F	I	L	N	S	.	.	.	.	.	G	R	S	L	V	I	V	V	N	K	W	D	G	L	S	Q	E	V	K	E	Q	V	K	E	T	L	D	F	R	L	G	F	I	D	F	A	R	V	H	F	I	S	A
Query Conservation																																		.	.	.	.	.
Alig confidence		.	.																															.	.	.	.	.														.	.	.
Template Conservation		.	.																																																	.	.	.
Template Sequence		.	.	R	N	V	H	A	V	V	F	V	Y	D	M	T	N	M	A	S	F	H	S	L	P	A	W	I	E	E	C	K	Q	H	L	L	A	N	D	I	P	R	I	L	V	G	N	K	C	D	L	.	.	.	R	S	A	I	Q	V	P	T	D	L	A	Q	K	F	A	D	T	H	S	M	P	L	F	E	T	S	A
Template Known Secondary structure		.	.	T	T										T	T							T															S											T	T		.	.	.	G	G	G			S												T	T								S
Template Predicted Secondary structure		.	.																																																	.	.	.
Template SS confidence
				105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		356	.	.	.				360	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		L	H	G	S	.	.	.	G	V	G	N	L	F	E	S	V
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		K	N	P	N	D	N	D	H	V	E	A	I	F	M	T	L
Template Known Secondary structure		S	S	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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