Job Description P00963 Confidence 99.32% Date Thu Jan 5 10:57:25 GMT 2012 Rank 5 Aligned Residues 281 % Identity 13% Template c3g1zB_ PDB info PDB header:ligase Chain: B: PDB Molecule:putative lysyl-trna synthetase; PDBTitle: structure of idp01693/yjea, a potential t-rna synthetase from2 salmonella typhimurium Resolution 1.95 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	T	A	Y	I	A	K	Q	R	Q	I	S	F	V	K	S	H	F	S	R	Q	L	E	E	R	L	G	L	I	E	V	Q	A	P	I	L	S	R	V	G	D	G	T	Q	D	N	L	S	G	C	E	K	A	V	Q	V	K	V	K	A	L	P	D	A	Q	F	E	V	V	H	S	L	A	K	W	K	R	Q	T
Query Conservation
Alig confidence																								.	.	.	.	.													.	.	.	.	.
Template Conservation																								.	.	.	.	.													.	.	.	.	.
Template Sequence		S	I	P	N	L	L	K	R	A	A	I	M	A	E	I	R	R	F	F	A	D	R	.	.	.	.	.	G	V	L	E	V	E	T	P	C	M	S	Q	.	.	.	.	.	A	T	V	T	D	I	H	L	F	P	F	E	T	R	F	V	G	P	Q	G	I	N	L	Y	L	M	T	S	P	E	Y	H	M	K	R	L
Template Known Secondary structure																							T	.	.	.	.	.	T								S			S	.	.	.	.	.						T	T																				S		S
Template Predicted Secondary structure																								.	.	.	.	.													.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		L	G	Q	H	D	F	S	A	G	E	G	L	Y	T	H	M	K	A	L	R	P	D	E	D	R	L	S	P	L	H	S	V	Y	V	D	Q	W	D	W	E	R	V	M	G	D	G	E	R	Q	F	S	T	L	K	S	T	V	E	A	I	W	A	G	I	K	A	T	E	A	A	V	S	E	E	F	G	.	L	A	P
Query Conservation																																																																														.
Alig confidence						.	.	.	.																.	.																																																				.
Template Conservation						.	.	.	.																.	.
Template Sequence		L	A	A	G	.	.	.	.	C	G	P	V	F	Q	L	C	R	S	F	R	N	E	E	.	.	M	G	R	H	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	M	Y	R	L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	Q	P	A	E	S	L	S	Y	Q	Q	A	F	Q	R	H	L	E
Template Known Secondary structure				T	T	.	.	.	.			S													.	.		B	T	T	B		S											T																																					S
Template Predicted Secondary structure						.	.	.	.																.	.
Template SS confidence
		85	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.										.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.
Query Sequence		F	L	P	D	Q	I	H	F	V	H	S	Q	E	L	L	S	R	Y	P	D	L	D	A	K	G	R	E	R	A	I	A	K	D	L	.	.	.	.	.	.	.	.	.	G	A	V	F	L	V	G	I	G	G	K	L	S	D	G	H	R	H	D	V	R	A	P	D	Y	D	D	W	S	T	P	S	E	L	G	H	A
Query Conservation																																				.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		I	D	P	L	S	A	D	K	T	Q	L	R	E	A	A	A	K	L	D	L	E	E	D	R	D	T	L	L	Q	L	L	F	T	M	G	V	E	P	H	I	G	K	E	K	P	T	F	I	Y	H	F	.	.	.	.	.	.	.	.	P	A	S	Q	A	S	L	A	Q	I	S	T	E	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T													T	T																	T	G	G	G	S	S	S	S	S								.	.	.	.	.	.	.	.	B	G	G	G		T	T	B		B		S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.									210	.	.	.	.	.	.	.	.	.	220	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		G	L	N	G	D	I	L	V	W	N	P	V	L	E	D	A	F	E	L	S	S	M	G	I	R	V	D	.	.	.	.	.	A	D	T	L	K	H	Q	L	A	L	T	G	D	E	D	R	L	E	L	E	W	H	Q	A	L	L	R	G	E	M	P	Q	T	I	G	G	G	I	G	Q	S	R	L	T	M	L	L	L
Query Conservation																													.	.	.	.	.
Alig confidence		.	.																										.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	D	H	R	V	A	E	R	F	E	V	Y	Y	K	G	I	E	L	A	N	G	F	H	E	L	T	D	A	R	E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	G	L	P	Q	Q	P	I	D	Q	N	L	L	D	A	L	A	A	G	L	P	D	C	S	G	V	A	L	G	V	D	R	L	V	M	L	A	L
Template Known Secondary structure		.	.		T	T	B	B	S							T	T									B																																							S
Template Predicted Secondary structure		.	.
Template SS confidence
				229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	P	H	I	G	Q	V	Q	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	E	S	L	A	D	V	I	A
Template Known Secondary structure		T		S	S	G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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