Job Description P00963 Confidence 98.96% Date Thu Jan 5 10:57:25 GMT 2012 Rank 14 Aligned Residues 275 % Identity 21% Template c3e9hB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	T	A	Y	I	A	K	Q	R	Q	I	S	F	V	K	S	H	F	S	R	Q	L	E	E	R	L	G	L	I	E	V	Q	A	P	I	L	S	R	V	G	D	G	T	Q	D	N	L	S	G	C	E	K	A	V	Q	V	K	V	K	A	L	P	D	A	Q	F	E	V	V	H	S	L	A	K	W	K	R	Q	T
Query Conservation
Alig confidence																								.	.	.	.	.																	.	.	.	.	.	.														.
Template Conservation																								.	.	.	.	.																	.	.	.	.	.	.														.
Template Sequence		S	K	K	T	F	I	T	R	S	L	I	I	Q	S	M	R	R	Y	L	D	S	H	.	.	.	.	.	G	Y	L	E	V	E	T	P	M	M	H	A	V	A	G	G	.	.	.	.	.	.	A	A	A	R	P	F	I	T	H	H	N	A	L	.	D	M	T	L	Y	M	R	I	A	I	E	L	H	L	K	R	L
Template Known Secondary structure																							T	.	.	.	.	.	T								S			S	S			S	.	.	.	.	.	.	S	S									T	T	T	.	T							S		S
Template Predicted Secondary structure																								.	.	.	.	.																	.	.	.	.	.	.														.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		L	G	Q	H	D	F	S	A	G	E	G	L	Y	T	H	M	K	A	L	R	P	D	E	D	R	L	S	P	L	H	S	V	Y	V	D	Q	W	D	W	E	R	V	M	G	D	G	E	R	Q	F	S	T	L	K	S	T	V	E	A	I	W	A	G	I	K	A	T	E	A	A	V	S	E	E	F	G	.	L	A	P
Query Conservation																																																																														.
Alig confidence				.	.	.	.															.				.																																													.	.	.					.
Template Conservation				.	.	.	.															.				.																																													.	.	.
Template Sequence		I	V	.	.	.	.	G	G	L	E	K	V	Y	E	I	G	R	V	F	R	.	N	E	G	.	I	S	T	R	H	N	P	E	F	T	M	L	E	L	Y	E	A	Y	A	D	F	R	D	I	M	K	L	T	E	N	L	I	A	H	I	A	T	E	V	L	G	T	T	K	.	.	.	I	Q	Y	G	E	H	L	V
Template Known Secondary structure				.	.	.	.	T	T													.				.		B	T	T	B		S											T																							S		S		.	.	.				T	T
Template Predicted Secondary structure				.	.	.	.															.				.																																													.	.	.
Template SS confidence
		238	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300				.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.																												.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	P	D	Q	I	H	F	V	H	S	Q	E	L	L	S	R	Y	.	.	.	.	.	.	P	D	L	D	A	K	G	R	E	R	A	I	A	K	D	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	F	L	V	G	I	G	G	K	L	S
Query Conservation																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		D	L	T	P	E	W	R	R	L	H	M	V	D	A	I	K	E	Y	V	G	V	D	F	W	R	Q	M	S	D	E	E	A	R	.	E	L	A	K	E	H	G	V	E	V	A	P	H	M	T	F	G	H	I	V	N	E	F	F	E	Q	K	V	E	D	K	L	I	Q	P	T	F	I	Y	G	H	P	V	E	I	S
Template Known Secondary structure					S	S																			S	S									.							T					T	T															T	G	G	G			S								B	G	G	G
Template Predicted Secondary structure																																			.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.									.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.
Query Sequence		D	G	H	R	H	D	V	R	A	P	D	Y	D	D	W	S	T	P	S	E	L	G	H	A	G	L	N	G	D	I	L	V	W	N	P	V	L	E	D	A	F	E	L	S	S	M	G	I	R	V	D	.	.	.	.	.	.	.	.	A	D	T	L	K	H	Q	L	A	L	T	G	D	E	D	R	L	E	L	E	W
Query Conservation																																																					.	.	.	.	.	.	.	.
Alig confidence		.	.	.														.	.	.	.	.	.	.	.	.								.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation		.	.	.														.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template Sequence		.	.	.	P	L	A	K	K	N	P	D	D	P	R	F	T	.	.	.	.	.	.	.	.	.	D	R	F	E	L	F	I	.	.	.	.	.	.	V	G	R	E	H	A	N	A	F	T	E	L	N	D	P	I	D	Q	R	Q	R	F	E	E	Q	L	K	E	R	E	Q	G	N	D	E	A	H	E	M	D	E	D
Template Known Secondary structure		.	.	.	T	T	B		B		S	S		T	T	B	B	.	.	.	.	.	.	.	.	.	S							.	.	.	.	.	.	T	T									B																				T	T		T	T
Template Predicted Secondary structure		.	.	.														.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template SS confidence
					388	.	390	.	.	.	.	.	.	.	.	.	400										.	.	.	.	.	.	.							.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	A	L	L	R	G	E	M	P	Q	T	I	G	G	G	I	G	Q	S	R	L	T	M	L	L	L	Q	L	P	H	I	G	Q	V	Q	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	E	A	L	E	Y	G	M	P	P	T	G	G	L	G	I	G	V	D	R	L	V	M	L	L	T	N	S	P	S	I	R	D	V	L	L
Template Known Secondary structure								T				S															T	T	T		S	S	G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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