Job Description P00963 Confidence 98.85% Date Thu Jan 5 10:57:25 GMT 2012 Rank 16 Aligned Residues 278 % Identity 17% Template c3bjuB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	T	A	Y	I	A	K	Q	R	Q	I	S	F	V	K	S	H	F	S	R	Q	L	E	E	R	L	G	L	I	E	V	Q	A	P	I	L	S	R	V	G	D	G	T	Q	D	N	L	S	G	C	E	K	A	V	Q	V	K	V	K	A	L	P	D	A	Q	F	E	V	V	H	S	L	A	K	W	K	R	Q	T
Query Conservation
Alig confidence																								.	.	.	.	.																	.	.	.	.	.	.														.
Template Conservation																								.	.	.	.	.																	.	.	.	.	.	.														.
Template Sequence		V	R	Q	K	F	I	I	R	S	K	I	I	T	Y	I	R	S	F	L	D	E	L	.	.	.	.	.	G	F	L	E	I	E	T	P	M	M	N	I	I	P	G	G	.	.	.	.	.	.	A	V	A	K	P	F	I	T	Y	H	N	E	L	.	D	M	N	L	Y	M	R	I	A	P	E	L	Y	H	K	M	L
Template Known Secondary structure																							T	.	.	.	.	.	T								S			S	S			S	.	.	.	.	.	.	S	S	S								T	T	T	.	T							S		S
Template Predicted Secondary structure																								.	.	.	.	.																	.	.	.	.	.	.														.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		L	G	Q	H	D	F	S	A	G	E	G	L	Y	T	H	M	K	A	L	R	P	D	E	D	R	L	S	P	L	H	S	V	Y	V	D	Q	W	D	W	E	R	V	M	G	D	G	E	R	Q	F	S	T	L	K	S	T	V	E	A	I	W	A	G	I	K	A	T	E	A	A	V	S	E	E	F	G	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence				.	.	.	.															.				.																																																				.	.	.	.
Template Conservation				.	.	.	.															.				.
Template Sequence		V	V	.	.	.	.	G	G	I	D	R	V	Y	E	I	G	R	Q	F	R	.	N	E	G	.	I	D	L	T	H	N	P	E	F	T	T	C	E	F	Y	M	A	Y	A	D	Y	H	D	L	M	E	I	T	E	K	M	V	S	G	M	V	K	H	I	T	G	S	Y	K	V	T	Y	H	P	D	G	P	E	G	Q
Template Known Secondary structure				.	.	.	.	T	T													.				.		B	T	T	B		S											T																						T	S	S	S						T	T		T	T	S
Template Predicted Secondary structure				.	.	.	.															.				.
Template SS confidence
		308	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
			157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.												.	.	.	.	.	.	.	.	190	.	.	.	.	.																												.	.
Predicted Secondary structure		.																										.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																										.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	L	A	P	F	L	P	D	Q	I	H	F	V	H	S	Q	E	L	L	S	R	Y	P	D	L	D	.	.	.	.	.	.	.	.	.	.	.	A	K	G	R	E	R	A	I	A	K	D	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F
Query Conservation		.																										.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																										.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Y	D	V	D	F	T	P	P	F	R	R	I	N	M	V	E	E	L	E	K	A	L	G	M	K	L	P	E	T	N	L	F	E	T	E	E	T	R	K	I	L	D	D	I	C	V	A	K	A	V	E	C	P	P	P	R	T	T	A	R	L	L	D	K	L	V	G	E	F	L	E	V	T	C	I	N	P	T	F
Template Known Secondary structure									S	S															T	S					G	G	G	T	T	S														T	T					S																T	G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		L	V	G	I	G	G	K	L	S	D	G	H	R	H	D	V	R	A	P	D	Y	D	D	W	S	T	P	S	E	L	G	H	A	G	L	N	G	D	I	L	V	W	N	P	V	L	E	D	A	F	E	L	S	S	M	G	I	R	V	D	.	.	.	.	.	A	D	T	L	K	H	Q	L	A	L	T	G	D	E	D
Query Conservation																																																														.	.	.	.	.
Alig confidence											.	.	.														.	.	.	.	.	.	.	.	.								.	.	.	.	.	.														.	.	.	.	.
Template Conservation											.	.	.														.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template Sequence		I	C	D	H	P	Q	I	M	S	.	.	.	P	L	A	K	W	H	R	S	K	E	G	L	T	.	.	.	.	.	.	.	.	.	E	R	F	E	L	F	V	.	.	.	.	.	.	M	K	K	E	I	C	N	A	Y	T	E	L	N	D	P	M	R	Q	R	Q	L	F	E	E	Q	A	K	A	K	A	A	G	D
Template Known Secondary structure						B	G	G	G		.	.	.	T	T	B		B		S	S	S	T	T	B	B	.	.	.	.	.	.	.	.	.	S							.	.	.	.	.	.	T	T									B																				T	T
Template Predicted Secondary structure											.	.	.														.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template SS confidence
		462	.	.	.	.	.	.	.	470				.	.	.	.	.	.	.	.	.	480	.	.	.										.	.	.	.	.	.	490							.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		273	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		R	L	E	L	E	.	.	.	.	W	H	Q	A	L	L	R	G	E	M	P	Q	T	I	G	G	G	I	G	Q	S	R	L	T	M	L	L	L	Q	L	P	H	I	G	Q	V	Q	C
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.									.
Template Conservation																			.
Template Sequence		D	E	A	M	F	I	D	E	N	F	C	T	A	L	E	Y	G	.	L	P	P	T	A	G	W	G	M	G	I	D	R	V	A	M	F	L	T	D	S	N	N	I	K	E	V	L	L
Template Known Secondary structure		T	T	S												T	T	T	.			S																T	T		S	S	G	G	G	G	S	S
Template Predicted Secondary structure																			.
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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