Job Description P00963 Confidence 98.94% Date Thu Jan 5 10:57:25 GMT 2012 Rank 15 Aligned Residues 275 % Identity 20% Template c1e22A_ PDB info PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp Resolution 2.43 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	T	A	Y	I	A	K	Q	R	Q	I	S	F	V	K	S	H	F	S	R	Q	L	E	E	R	L	G	L	I	E	V	Q	A	P	I	L	S	R	V	G	D	G	T	Q	D	N	L	S	G	C	E	K	A	V	Q	V	K	V	K	A	L	P	D	A	Q	F	E	V	V	H	S	L	A	K	W	K	R	Q	T
Query Conservation
Alig confidence																								.	.	.	.	.																			.	.	.	.	.	.												.
Template Conservation																								.	.	.	.	.																			.	.	.	.	.	.												.
Template Sequence		S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q	F	M	V	A	R	.	.	.	.	.	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	S	.	.	.	.	.	.	A	R	P	F	I	T	H	H	N	A	L	.	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L
Template Known Secondary structure																							T	.	.	.	.	.	T								S			S	S			S	S		.	.	.	.	.	.	S								T	T	T	.	T							S		S
Template Predicted Secondary structure																								.	.	.	.	.																			.	.	.	.	.	.												.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		L	G	Q	H	D	F	S	A	G	E	G	L	Y	T	H	M	K	A	L	R	P	D	E	D	R	L	S	P	L	H	S	V	Y	V	D	Q	W	D	W	E	R	V	M	G	D	G	E	R	Q	F	S	T	L	K	S	T	V	E	A	I	W	A	G	I	K	A	T	E	A	A	V	S	E	E	F	G	.	L	A	P
Query Conservation																																																																														.
Alig confidence				.	.	.	.															.				.																																													.	.	.					.
Template Conservation				.	.	.	.															.				.																																													.	.	.
Template Sequence		V	V	.	.	.	.	G	G	F	E	R	V	F	E	I	N	R	N	F	R	.	N	E	G	.	I	S	V	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	.	.	.	V	T	Y	G	E	H	V	F
Template Known Secondary structure				.	.	.	.		T													.				.			S	S			S											S																							S	S	S		.	.	.				T	T
Template Predicted Secondary structure				.	.	.	.															.				.																																													.	.	.
Template SS confidence
		247	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.																												.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	P	D	Q	I	H	F	V	H	S	Q	E	L	L	S	R	Y	.	.	.	.	.	.	P	D	L	D	A	K	G	R	E	R	A	I	A	K	D	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	F	L	V	G	I	G	G	K	L	S
Query Conservation																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	G	K	P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S
Template Known Secondary structure			T	T	S															S	T	T			G	G	G	G	G	S											T	T					T	T															T	G	G	G			S								B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.																					.	.	.	.
Query SS confidence																																																					.	.	.	.	.																					.	.	.	.
Query Sequence		D	G	H	R	H	D	V	R	A	P	D	Y	D	D	W	S	T	P	S	E	L	G	H	A	G	L	N	G	D	I	L	V	W	N	P	V	L	E	D	A	F	E	L	S	S	M	G	I	R	V	D	.	.	.	.	.	A	D	T	L	K	H	Q	L	A	L	T	G	D	E	D	R	L	E	L	E	.	.	.	.
Query Conservation																																																					.	.	.	.	.																					.	.	.	.
Alig confidence					.	.	.											.	.	.	.	.	.	.	.	.								.	.	.	.	.	.														.	.	.	.	.																					.	.	.	.
Template Conservation					.	.	.											.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template Sequence		P	L	A	.	.	.	R	R	N	D	V	N	P	E	I	T	.	.	.	.	.	.	.	.	.	D	R	F	E	F	F	I	.	.	.	.	.	.	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	D	D	E	A	M	F	Y	D	E	D
Template Known Secondary structure		T	T	B	.	.	.		B		S	S		T	T	B	B	.	.	.	.	.	.	.	.	.	S							.	.	.	.	.	.	T	T									B																				T	T		T	T
Template Predicted Secondary structure					.	.	.											.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template SS confidence
		398	.	400				.	.	.	.	.	.	.	.	.	410										.	.	.	.	.	.	.							.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	Q	A	L	L	R	G	E	M	P	Q	T	I	G	G	G	I	G	Q	S	R	L	T	M	L	L	L	Q	L	P	H	I	G	Q	V	Q	C
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		Y	V	T	A	L	E	Y	G	.	L	P	P	T	A	G	L	G	I	G	I	D	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L
Template Known Secondary structure										.			S																T	T		S	S	G	G	G	S	S	S
Template Predicted Secondary structure										.
Template SS confidence
		460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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