Job Description P00963 Confidence 99.03% Date Thu Jan 5 10:57:25 GMT 2012 Rank 12 Aligned Residues 281 % Identity 17% Template c1asyA_ PDB info PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	T	A	Y	I	A	K	Q	R	Q	I	S	F	V	K	S	H	F	S	R	Q	L	E	E	R	L	G	L	I	E	V	Q	A	P	I	L	S	R	V	G	D	G	T	Q	D	N	L	S	G	C	E	K	A	V	Q	V	K	V	K	A	L	P	D	A	Q	F	E	V	V	H	S	L	A	K	W	K	R	Q	T
Query Conservation
Alig confidence																								.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Sequence		N	Q	A	I	F	R	I	Q	A	G	V	C	E	L	F	R	E	Y	L	A	T	K	.	.	.	.	.	K	F	T	E	V	H	T	P	K	L	L	G	A	P	.	.	.	.	.	.	.	.	.	S	E	G	G	S	S	V	F	E	V	T	Y	F	K	G	K	A	Y	L	A	Q	S	P	Q	F	N	K	Q	Q	L
Template Known Secondary structure																							T	.	.	.	.	.	T								S			S	S		.	.	.	.	.	.	.	.	.	S	T	T	T	T	S			B			B	T	T	B						S		S
Template Predicted Secondary structure																								.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.										280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		L	G	Q	H	D	F	S	A	G	E	G	L	Y	T	H	M	K	A	L	R	P	D	E	D	R	L	S	P	L	H	S	V	Y	V	D	Q	W	D	W	E	R	V	M	G	D	.	.	.	.	.	G	E	R	Q	F	S	T	L	K	S	T	V	E	A	I	W	A	G	I	K	A	T	E	A	A	V	S	E	E	F
Query Conservation																																															.	.	.	.	.
Alig confidence				.	.	.	.															.																									.	.	.	.	.
Template Conservation				.	.	.	.															.
Template Sequence		I	V	.	.	.	.	A	D	F	E	R	V	Y	E	I	G	P	V	F	R	.	A	E	N	S	N	T	H	R	H	M	T	E	F	T	G	L	D	M	E	M	A	F	E	E	H	Y	H	E	V	L	D	T	L	S	E	L	F	V	F	I	F	S	E	L	P	K	R	F	A	H	E	I	E	L	V	R	K	Q	Y
Template Known Secondary structure				.	.	.	.	T	T													.		S					S	S			S	S											S	S		T																															T	T	S
Template Predicted Secondary structure				.	.	.	.															.
Template SS confidence
		310	.					.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		156	.	.	.		160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.					.	.	.	.	.														.	.	.	.	.	.																.	.	.	.
Query SS confidence						.					.	.	.	.	.														.	.	.	.	.	.																.	.	.	.
Query Sequence		G	L	A	P	.	F	L	P	D	.	.	.	.	.	Q	I	H	F	V	H	S	Q	E	L	L	S	R	.	.	.	.	.	.	Y	P	D	L	D	A	K	G	R	E	R	A	I	A	K	.	.	.	.	D	L	G	A	V	F	L	V	G	I	G	G	K	L	S	D	G	H	R	H	D	V	R	A	P	D	Y	D
Query Conservation						.					.	.	.	.	.														.	.	.	.	.	.																.	.	.	.
Alig confidence						.					.	.	.	.	.														.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		P	V	E	E	F	K	L	P	K	D	G	K	M	V	R	L	T	Y	K	E	G	I	E	M	L	R	A	A	G	K	E	I	G	D	F	E	D	L	S	T	E	N	E	K	F	L	G	K	L	V	R	D	K	Y	D	T	D	F	Y	I	L	D	K	F	P	L	E	I	R	P	F	Y	T	M	P	D	P	A	N	P
Template Known Secondary structure										S	S	S																	T	T					S	S	S																					S								B	T	T	S	S		T	T	B		B		S	S		T
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																									.																	.
Query SS confidence																																									.																	.
Query Sequence		D	W	S	T	P	S	E	L	G	H	A	G	L	N	G	D	I	L	V	W	N	P	V	L	E	D	A	F	E	L	S	S	M	G	I	R	V	D	A	.	D	T	L	K	H	Q	L	A	L	T	G	D	E	D	R	L	.	E	L	E	W	H	Q	A	L	L	R	G	E	M	P	Q	T	I	G	G	G	I	G	Q
Query Conservation																																									.																	.
Alig confidence					.	.	.	.	.	.	.	.	.								.	.	.	.	.	.															.																	.
Template Conservation					.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template Sequence		K	Y	S	.	.	.	.	.	.	.	.	.	N	S	Y	D	F	F	M	.	.	.	.	.	.	R	G	E	E	I	L	S	G	A	Q	R	I	H	D	H	A	L	L	Q	E	R	M	K	A	H	G	L	S	P	E	D	P	G	L	K	D	Y	C	D	G	F	S	Y	G	C	P	P	H	A	G	G	G	I	G	L
Template Known Secondary structure		T	B	B	.	.	.	.	.	.	.	.	.	S							.	.	.	.	.	.	T	T																							T	T			T	T	S									T	T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.								.	.	.	.	.	.
Template SS confidence
		465	.	.										.	.	470	.	.	.	.							.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	L	T	M	L	L	L	Q	L	P	H	I	G	Q	V	Q	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	V	V	M	F	Y	L	D	L	K	N	I	R	R	A	S	L
Template Known Secondary structure										T		S		G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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