Job Description P10031 Confidence 3.91% Date Thu Jan 5 11:32:00 GMT 2012 Rank 100 Aligned Residues 75 % Identity 12% Template c1y1yS_ PDB info PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex Resolution 4.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.
Predicted Secondary structure																																													.																										.	.	.
Query SS confidence																																													.																										.	.	.
Query Sequence		M	K	T	E	L	T	L	N	V	L	Q	T	M	N	A	Q	E	Y	E	D	I	R	A	A	G	S	D	E	R	R	E	L	T	H	A	V	M	R	E	L	D	A	P	.	D	N	W	T	M	N	G	E	Y	G	S	E	F	G	G	F	F	P	V	Q	V	R	F	T	P	.	.	.	A	H	E	R	F	H	L	A
Query Conservation																																													.																										.	.	.
Alig confidence																					.	.																							.																										.	.	.
Template Conservation																					.	.
Template Sequence		A	N	G	D	I	T	P	E	F	L	A	T	C	D	A	K	D	L	A	.	.	P	A	P	L	K	Q	K	I	E	E	I	A	K	Q	N	L	Y	N	A	Q	G	A	T	I	E	R	S	V	T	D	R	F	T	C	G	K	C	K	E	K	K	V	S	Y	Y	Q	L	Q	T	R	S	A	D	E	P	L	T	T	F
Template Known Secondary structure		T			T					T	T	T	S	S		S	T	T	T	S	.	.	S	S	S																T	S										T	T				S	S	S			S										S		T	T	S
Template Predicted Secondary structure																					.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		77
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		297

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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