Job Description P26602 Confidence 10.85% Date Thu Jan 5 11:42:57 GMT 2012 Rank 21 Aligned Residues 116 % Identity 8% Template c3bwgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 Resolution 2.09 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	V	S	V	T	M	I	R	E	G	F	V	E	Q	N	E	I	P	E	E	L	P	L	L	P	K	E	S	R	Y	W	L	R	E	I	L	L	C	A	D	G	E	P	W	L	A	G	R	T	V	V	P	V	S	T	L	S	G	P	E	L	A	L	Q	K	L	G	K	T	P	L	G	R	Y	L	F	T	S
Query Conservation
Alig confidence																																																																					.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		D	F	N	V	T	S	K	V	I	E	L	D	V	R	K	P	T	P	E	A	A	E	N	L	N	I	G	X	D	E	D	I	Y	Y	V	K	R	V	R	Y	I	N	G	Q	T	L	C	Y	E	E	S	Y	Y	T	K	S	I	V	T	Y	L	N	N	E	I	V	S	.	.	.	H	S	I	F	H	Y	I	R	E	G
Template Known Secondary structure																										T			T	T	S												T	T												T	T	T	S									T	.	.	.	S									T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.
		123			.	.	.	.	.	.	130	.	.	.	.																	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	.	.	T	L	T	R	D	F	I	E	I	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	G	L	W	G	R	R	S	R	L	R	L	S	G	K	P	L	L	L	T	E	L	F	L	P	A
Query Conservation			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	L	K	I	G	F	S	D	L	F	L	H	V	G	Q	L	N	E	E	E	A	E	Y	L	G	L	E	A	G	L	P	K	L	Y	I	E	S	I	F	H	L	T	N	G	Q	P	F	D	Y	S	K	I	S	Y	N	Y
Template Known Secondary structure		S																									T	S		T	T	S												T	T	S												T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions