Return to main results Retrieve Phyre Job Id

Job DescriptionP26602
Confidence3.88%DateThu Jan 5 11:42:57 GMT 2012
Rank24Aligned Residues20
% Identity20%Templatec1cl4A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:protein (gag polyprotein); PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133......140. ........150..
Predicted Secondary structure 



..

Query SS confidence 








. .










Query Sequence  GRDAGLWGR. . RSRLRLSGKPL
Query Conservation       



..

 
     

Alig confidence 








..










Template Conservation 
 

 


 




    
 

Template Sequence  CKRGKHWANECKSKTDNQGNPI
Template Known Secondary structure 
SS
SS
STT


TTSSSS


Template Predicted Secondary structure 










Template SS confidence 





















   56...60.........70.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions