Job Description P0AE28 Confidence 60.04% Date Thu Jan 5 11:22:22 GMT 2012 Rank 56 Aligned Residues 128 % Identity 15% Template c3ivuB_ PDB info PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og Resolution 2.72 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.														.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	I	L	T	L	L	N	D	N	Q	L	A	H	V	S	R	R	K	V	E	R	D	L	Q	G	V	V	E	V	L	D	N	Q	G	Y	D	V	I	L	L	M	S	T	A	N	I	S	S	M	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	T	I	F	L	E	P	S	R	I	L	P	P	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																											.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																											.	.	.	.
Template Sequence		S	I	I	E	S	T	L	R	E	G	E	Q	F	A	.	N	A	F	F	D	T	E	K	K	I	Q	I	A	K	A	L	D	N	F	G	V	D	Y	I	E	L	.	.	.	.	T	S	P	V	A	S	E	Q	S	R	Q	D	C	E	A	I	C	K	L	G	L	K	C	K	I	L	T	H	I	R	C	H	M	D	D
Template Known Secondary structure							T	T	T	G	G	G	G	S	T	.	T																			T		S					.	.	.	.			G	G	G													T	S			S	S								S
Template Predicted Secondary structure																.																											.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		123	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.															140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure							.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	S	I	V	.	.	E	D	H	Q	V	G	V	I	V	P	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	L	P	V	Q	A	Q	K	W	Q	I	L	Q	K	S	P	V	F	S	L	G	N	P	I	H	D	S	E	Q	K	I	I	D	A	G	K	E	L	L	A	K	G	A	D	V	I
Query Conservation							.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	V	A	V	E	T	G	V	D	G	V	D	V	V	I	G	T	S	Q	Y	L	R	K	Y	S	H	D	M	T	Y	I	I	D	S	A	T	E	V	I	N	F	V	K	S	K	G	I	E	V	R	F	S	S	E	D	S	F	R	S	D	L	V	D	L	L	S	L	Y	K	A	V	D	K	I	G	V	N	R	V
Template Known Secondary structure								T	T		S								G	G	G																										T	T								T	T	G	G	G	S																		S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		187	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		193	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions