Job Description P0AE28 Confidence 21.93% Date Thu Jan 5 11:22:22 GMT 2012 Rank 169 Aligned Residues 132 % Identity 12% Template c2cw6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria Resolution 2.10 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.															.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	I	L	T	L	L	N	D	N	Q	L	A	H	V	S	R	R	K	V	E	R	D	L	Q	G	V	V	E	V	L	D	N	Q	G	Y	D	V	I	L	L	M	S	T	A	N	I	S	S	M	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	T	I	F	L	E	P	S	R	I	L	P	P
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		K	I	V	E	V	G	P	R	D	G	L	Q	N	.	E	K	N	I	V	S	T	P	V	K	I	K	L	I	D	M	L	S	E	A	G	L	S	V	I	E	T	T	S	F	V	S	P	K	W	V	P	Q	M	G	D	H	T	E	V	L	K	G	I	Q	K	F	P	G	I	N	Y	P	V	L	T	P	N	L	K	G
Template Known Secondary structure							T	T	T					T	.		S	S																	T	T		S										T	T	T		G	G	G	T	T								S				T	T		B							S
Template Predicted Secondary structure															.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		122	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.																	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure										.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Query SS confidence										.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Query Sequence		L	V	S	S	I	V	E	D	.	H	Q	V	G	V	I	V	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	M	L	P	V	Q	A	Q	K	W	Q	I	L	Q	K	S	P	V	F	S	L	G	N	P	I	H	.	.	.	.	.	.	D	S	E	Q	K	I	I	D	A	G	K	E	L
Query Conservation										.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Alig confidence										.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	A	A	V	A	A	G	A	K	E	V	V	I	F	G	A	A	S	E	L	F	T	K	K	N	I	N	C	S	I	E	E	S	F	Q	R	F	D	A	I	L	K	A	A	Q	S	A	N	I	S	V	R	G	Y	V	S	C	A	L	G	C	P	Y	E	G	K	I	S	P	A	K	V	A	E	V	T	K	K	F
Template Known Secondary structure								T	T		S								S									T	S	S		T	T	T															T	T									S	T	T		B	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		179	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	G	A	D	V	I	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	M	G	C	Y	E	I	S	L
Template Known Secondary structure				T	T		S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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