Phyre 2 alignment of P23256 with d1v2da

Job Description P23256
Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012

Rank 51 Aligned Residues 351

% Identity 20% Template d1v2da_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V
Query Conservation																																																		.
Alig confidence																																						.												.													.	.	.	.	.	.
Template Conservation																																						.																									.	.	.	.	.	.
Template Sequence	F	P	R	M	S	G	L	A	Q	R	L	G	A	V	N	L	G	Q	G	F	P	S	N	P	P	P	P	F	L	L	E	A	V	R	R	A	L	.	G	R	Q	D	Q	Y	A	P	P	A	G	L	P	A	L	R	E	A	L	A	E	E	F	A	.	.	.	.	.	.	V	E	P	E	S	V	V	V	T	S	G	A
Template Known Secondary structure												T								S		S	S														T	.	T	T	S		S				T	T														T	.	.	.	.	.	.	S		G	G	G					S	S
Template Predicted Secondary structure																																						.																									.	.	.	.	.	.
Template SS confidence
	15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.	.	.	80	.	.	.	.	.	.	.

	97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence	T	E	A	L	Y	V	L	L	Q	S	L	V	G	P	G	D	E	V	V	V	L	E	P	F	F	D	V	Y	L	P	D	A	F	L	A	G	A	K	A	R	L	V	R	L	D	L	T	P	E	G	F	R	L	D	L	S	A	L	E	K	A	L	.	T	P	R	T	R	A	L	L	L	N	T	P	M	N	P	T	G
Template Known Secondary structure														T	T								S			T	T								T	T												T	T											T	T		.		T	T								S	S		T	T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

	177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence	L	V	F	G	E	R	E	L	E	A	I	A	R	L	A	R	A	H	D	L	F	L	I	S	D	E	V	Y	D	E	L	Y	Y	G	.	E	R	P	R	R	L	R	E	F	A	P	E	R	T	F	T	V	G	S	A	G	K	R	L	E	A	T	G	Y	R	V	G	W	I	V	G	P	K	E	F	M	P	R	L	A
Template Known Secondary structure																		T	T								T	T	T	T		B	S	S	.	S										T	T	T											T	T		G	G	G									T	T	T
Template Predicted Secondary structure																																			.
Template SS confidence
	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

	257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N
Query Conservation
Alig confidence											.																																											.	.																						.	.	.	.
Template Conservation											.																																											.	.																						.	.	.	.
Template Sequence	G	M	R	Q	W	T	S	F	S	A	.	P	T	P	L	Q	A	G	V	A	E	A	L	K	L	A	R	R	E	G	F	Y	E	A	L	R	E	G	Y	R	R	R	R	D	L	L	A	G	G	L	R	A	M	.	.	G	L	R	V	Y	V	P	E	G	T	Y	F	L	M	A	E	L	P	G	W	D	.	.	.	.
Template Known Secondary structure							T	S	S		.																		T	T																							T	.	.	T							S	B	S	S							T	T			.	.	.	.
Template Predicted Secondary structure											.																																											.	.																						.	.	.	.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	.	.	E	G	R	G	F	V	R	L	N	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I
Query Conservation																							.	.
Alig confidence	.	.																					.	.
Template Conservation	.	.
Template Sequence	.	.	A	F	R	L	V	E	E	A	R	V	A	L	I	P	A	S	A	F	Y	L	E	D	P	P	K	D	L	F	R	F	A	F	C	K	T	E	E	E	L	H	L	A	L	E	R	L	G	R	V	V
Template Known Secondary structure	.	.								T							G	G	G	G		S	S	S			T	T								S
Template Predicted Secondary structure	.	.
Template SS confidence
			319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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