Phyre 2 alignment of P23256 with d1pffa

Job Description P23256
Confidence 99.92% Date Thu Jan 5 11:39:19 GMT 2012

Rank 178 Aligned Residues 298

% Identity 11% Template d1pffa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.																																															.												.	.	.
Template Conservation											.	.	.	.	.	.	.	.																																															.												.	.	.
Template Sequence	A	L	E	G	K	I	A	K	L	E	.	.	.	.	.	.	.	.	H	A	E	A	C	A	A	T	A	S	G	M	G	A	I	A	A	S	V	W	T	F	L	K	A	G	D	H	L	I	S	D	D	C	L	Y	G	C	T	H	A	L	F	E	H	Q	.	L	R	K	F	G	V	E	V	D	F	I	.	.	.	D
Template Known Secondary structure											.	.	.	.	.	.	.	.	T		S						S	S															T	T							S												T		.				T	T							.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																																															.												.	.	.
Template SS confidence
	66	.	.	.	70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.				.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L
Query Conservation
Alig confidence																																									.	.	.																								.	.	.	.	.	.	.
Template Conservation																																									.	.	.																								.	.	.	.	.	.	.
Template Sequence	M	A	V	P	G	N	I	E	K	H	L	K	P	N	T	R	I	V	Y	F	E	T	P	A	N	P	T	L	K	V	I	D	I	E	D	A	V	K	Q	A	.	.	.	R	K	Q	K	D	I	L	V	I	V	D	N	T	F	A	S	P	I	L	T	N	P	L	.	.	.	.	.	.	.	D	L	G	V	D	I	V
Template Known Secondary structure	T	T	S	T	T					T			T	T								S	S		T	T	T														.	.	.	T	T	S	S	S								T	T	T							G	G	.	.	.	.	.	.	.	G	G	T		S
Template Predicted Secondary structure																																									.	.	.																								.	.	.	.	.	.	.
Template SS confidence
	134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	.	.	.
Query Conservation																																																																														.	.	.
Alig confidence																																																																														.	.	.
Template Conservation
Template Sequence	V	H	S	A	T	K	Y	I	N	G	H	T	D	V	V	A	G	L	V	C	S	R	A	D	I	I	A	K	V	K	S	Q	G	I	K	D	I	T	G	A	I	I	S	P	H	D	A	W	L	I	T	R	G	T	L	T	L	D	M	R	V	K	R	A	A	E	N	A	Q	K	V	A	E	F	L	H	E	H	K	A
Template Known Secondary structure				T	T	T	T	T	S	S	S	S	S																			T																																															T	T
Template Predicted Secondary structure
Template SS confidence
	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

								305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	K	K	V	Y	Y	P	G	L	P	D	H	P	G	H	E	I	A	K	K	Q	M	K	M	F	G	S	M	I	A	F	D	V	D	G	L	E	K	A	K	K	V	L	D	N	C	H	V	V	S	L	A	V	S	L	G	G	P	E	S	L	I	Q	H	P	A	S	M	T	H	A	G	V	P	K	E	E	R	E	A
Template Known Secondary structure							T	T	S	T	T	S	T	T									S	S			S							S	S										T		S	S	S				S	S			S	S	S										T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

					361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.
Query SS confidence	.	.	.	.
Query Sequence	.	.	.	.	R	G	F	V	R	L	N	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation	.	.	.	.
Alig confidence	.	.	.	.											.	.
Template Conservation															.	.
Template Sequence	A	G	L	T	D	N	L	I	R	L	S	V	G	C	.	.	E	N	V	Q	D	I	I	D	D	L	K	Q	A	L	D	L	V
Template Known Secondary structure	T	T			T	T								S	.	.	S															T
Template Predicted Secondary structure															.	.
Template SS confidence
	365	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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