Phyre 2 alignment of P23256 with d1m6sa

Job Description P23256
Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012

Rank 89 Aligned Residues 330

% Identity 13% Template d1m6sa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E
Query Conservation
Alig confidence												.																																				.	.	.	.	.	.	.	.
Template Conservation												.																																				.	.	.	.	.	.	.	.
Template Sequence	M	I	D	L	R	S	D	T	V	T	K	.	P	T	E	E	M	R	K	A	M	A	Q	A	E	V	G	D	D	V	Y	G	E	D	P	T	I	N	E	L	E	R	L	A	A	E	T	.	.	.	.	.	.	.	.	F	G	K	E	A	A	L	F	V	P	S	G	T	M	G	N	Q	V	S	I	M	A	H	T	Q
Template Known Secondary structure					S		G	G	G			.											T						G	G	G	T																.	.	.	.	.	.	.	.	T	T		S						S
Template Predicted Secondary structure												.																																				.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.

	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																	.	.	.																																					.	.	.	.	.	.
Query SS confidence																	.	.	.																																					.	.	.	.	.	.
Query Sequence	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	.	.	.	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	.	.	.	.	.	.	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T
Query Conservation																	.	.	.																																					.	.	.	.	.	.
Alig confidence																	.	.	.																			.	.	.	.															.	.	.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence	R	G	D	E	V	I	L	E	A	D	S	H	I	F	W	Y	E	V	G	A	M	A	V	L	S	G	V	M	P	H	P	V	P	G	K	N	G	.	.	.	.	A	M	D	P	D	D	V	R	K	A	I	R	P	R	N	I	H	F	P	R	T	S	L	I	A	I	E	N	T	H	N	R	S	G	G	R	V	V	P
Template Known Secondary structure	T	T							T	T						S	S	T	T						T											T	T	.	.	.	.											S			S		T	T	S										S	S	B	T	T	T	T	S	B
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L
Query Conservation
Alig confidence																																										.																		.	.	.	.
Template Conservation																																										.																		.	.	.	.
Template Sequence	L	E	N	I	K	E	I	C	T	I	A	K	E	H	G	I	N	V	H	I	D	G	A	R	I	F	N	A	S	I	A	S	G	V	P	V	K	E	Y	A	G	.	Y	A	D	S	V	M	F	C	L	S	G	L	C	A	P	V	G	.	.	.	.	S	V	V	V	G	D	R	D	F	I	E	R	A	R	K	A	R
Template Known Secondary structure															T								T	T																		.	T		S												S	S		.	.	.	.
Template Predicted Secondary structure																																										.																		.	.	.	.
Template SS confidence
	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K
Query Conservation
Alig confidence																																																		.	.	.	.	.
Template Conservation																																																		.	.	.	.	.
Template Sequence	K	M	L	G	G	G	M	R	Q	A	G	V	L	A	A	A	G	I	I	A	L	T	K	M	V	D	R	L	K	E	D	H	E	N	A	R	F	L	A	L	K	L	K	E	I	G	Y	S	V	.	.	.	.	.	N	P	E	D	V	K	T	N	M	V	I	L	R	T	D	N	L	K	V	N	A	H	G	F	I	E
Template Known Secondary structure				T				S	S	T														S	S	T	T																			T		B		.	.	.	.	.		G	G	G			S	S							T	T	S	S	S
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

	341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	.	.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation																														.	.
Alig confidence						.									.	.	.	.	.	.										.	.
Template Conservation						.									.	.	.	.	.	.
Template Sequence	A	L	R	N	S	.	G	V	L	A	N	A	V	S	.	.	.	.	.	.	D	T	E	I	R	L	V	T	H	K	D	V	S	R	N	D	I	E	E	A	L	N	I	F	E	K	L	F	R	K	F
Template Known Secondary structure						.	T								.	.	.	.	.	.	T	T								T	T	S
Template Predicted Secondary structure						.									.	.	.	.	.	.
Template SS confidence
	299	300	.	.	.		.	.	.	.	.	.	310	.							.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions