Phyre 2 alignment of P23256 with d1gdea

Job Description P23256
Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012

Rank 21 Aligned Residues 373

% Identity 18% Template d1gdea_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90
Predicted Secondary structure																																																							.																							.
Query SS confidence																																																							.																							.
Query Sequence	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	.	T	V
Query Conservation																																																							.																							.
Alig confidence																																																							.																							.
Template Conservation
Template Sequence	S	A	S	E	I	R	K	L	F	D	I	A	A	G	M	K	D	V	I	S	L	G	I	G	E	P	D	F	D	T	P	Q	H	I	K	E	Y	A	K	E	A	L	D	K	G	L	T	H	Y	G	P	N	I	G	L	L	E	L	R	E	A	I	A	E	K	L	K	K	Q	N	G	I	E	A	D	P	K	T	E	I
Template Known Secondary structure																T	T								S			S																T	T			S				T	T																							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90

	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S
Query Conservation
Alig confidence																																																						.															.
Template Conservation																																																						.															.
Template Sequence	M	V	L	L	G	A	N	Q	A	F	L	M	G	L	S	A	F	L	K	D	G	E	E	V	L	I	P	T	P	A	F	V	S	Y	A	P	A	V	I	L	A	G	G	K	P	V	E	V	P	T	Y	E	E	.	D	E	F	R	L	N	V	D	E	L	K	K	Y	V	.	T	D	K	T	R	A	L	I	I	N	S
Template Known Secondary structure				S	S	T	T								T	T	T			T	T								S			T	T									T										G	G	.	G	T	T												.		T	T								S
Template Predicted Secondary structure																																																						.															.
Template SS confidence
	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.

	171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	.	.	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence	P	C	N	P	T	G	A	V	L	T	K	K	D	L	E	E	I	A	D	F	V	V	E	H	D	L	I	V	I	S	D	E	V	Y	E	H	F	I	Y	D	D	A	R	H	Y	S	I	A	S	L	D	G	M	F	E	R	T	I	T	V	N	G	F	S	K	T	F	A	M	T	G	W	R	L	G	F	V	A	A	P
Template Known Secondary structure	S		T	T	T																			T	T								T	T	T	T		B		T	T						G	G	G	S	T	T		G	G	G							S	T	T	T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

	249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L
Query Conservation
Alig confidence																																	.																													.	.
Template Conservation																																	.																													.	.
Template Sequence	S	W	I	I	E	R	M	V	K	F	Q	M	Y	N	A	T	C	P	V	T	F	I	Q	Y	A	A	A	K	A	L	K	D	.	E	R	S	W	K	A	V	E	E	M	R	K	E	Y	D	R	R	R	K	L	V	W	K	R	L	N	E	M	.	.	G	L	P	T	V	K	P	K	G	A	F	Y	I	F	P	R	I
Template Known Secondary structure													T	T	T		S														T		.																												T	.	.	T								B	T	T					B
Template Predicted Secondary structure																																	.																													.	.
Template SS confidence
	249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

	329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	D	T	G	L	T	S	K	K	F	S	E	L	M	L	K	E	A	R	V	A	V	V	P	G	S	A	F	G	K	A	G	E	G	Y	V	R	I	S	Y	A	T	A	Y	E	K	L	E	E	A	M	D	R	M	E	R	V	L	K	E	R	K
Template Known Secondary structure	G	G	G	T														T							G	G	G	G		G	G	G	T	T	B							S																			T	T
Template Predicted Secondary structure
Template SS confidence
	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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