Phyre 2 alignment of P23256 with d1gc0a

Job Description P23256
Confidence 99.96% Date Thu Jan 5 11:39:19 GMT 2012

Rank 126 Aligned Residues 300

% Identity 17% Template d1gc0a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	59	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	F	G	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P
Query Conservation									.
Alig confidence									.												.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence	F	T	F	P	S	N	P	T	L	N	L	L	E	A	R	M	A	S	L	E	.	.	.	.	.	.	.	.	G	G	E	A	G	L	A	L	A	S	G	M	G	A	I	T	S	T	L	W	T	L	L	R	P	G	D	E	V	L	L	G	N	T	L	Y	G	C	T	F	A	F	L	H	H	G	I	G	E	F	G	V
Template Known Secondary structure																					.	.	.	.	.	.	.	.	T		S						S	S															T	T							S	S			S									T	G	G	G	G	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
	38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.

	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W
Query Conservation
Alig confidence							.	.	.	.																																	.	.	.	.																														.	.	.	.	.
Template Conservation							.	.	.	.																																	.	.	.	.																														.	.	.	.	.
Template Sequence	K	L	R	H	V	D	.	.	.	.	M	A	D	L	Q	A	L	E	A	A	M	T	P	A	T	R	V	I	Y	F	E	S	P	A	N	P	N	M	H	M	A	D	.	.	.	.	I	A	G	V	A	K	I	A	R	K	H	G	A	T	V	V	V	D	N	T	Y	C	T	P	Y	L	Q	R	P	.	.	.	.	.
Template Known Secondary structure							.	.	.	.	T	T											T	T								S	S		T	T	T						.	.	.	.									G	G	G	T								T	T	T							G	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.																																	.	.	.	.																														.	.	.	.	.
Template SS confidence
	131	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D
Query Conservation
Alig confidence	.	.																																																													.	.	.	.	.
Template Conservation	.	.																																																													.	.	.	.	.
Template Sequence	.	.	L	E	L	G	A	D	L	V	V	H	S	A	T	Y	L	S	G	H	G	D	I	T	A	G	I	V	V	G	S	Q	A	L	V	D	R	I	R	L	Q	G	L	K	D	M	T	G	A	V	L	S	P	H	D	A	A	L	L	M	R	G	.	.	.	.	.	I	K	T	L	N	L	R	M	D	R	H	C	A
Template Known Secondary structure	.	.	G	G	G	T		S										S		S	S	S																			T						T																.	.	.	.	.		T	T
Template Predicted Secondary structure	.	.																																																													.	.	.	.	.
Template SS confidence
			198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270

	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.
Template Sequence	N	A	Q	V	L	A	E	F	L	A	R	Q	P	Q	V	E	L	I	H	Y	P	Q	P	G	G	M	I	A	F	E	L	K	G	G	I	G	A	G	R	R	F	M	N	A	L	.	Q	L	F	S	R	A	V	S	L	G	D	A	E	S	L	A	Q	H	P	A	S	M	T	H	S	S	Y	T	P	E	E	R	A	H
Template Known Secondary structure											T		T	T										T	T							T	T													.	S	S	S				S			S		S	S						G	G	G	T	T	T	S	S	S
Template Predicted Secondary structure																																														.
Template SS confidence
	272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

				360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.
Query SS confidence	.	.	.
Query Sequence	.	.	.	G	R	G	F	V	R	L	N	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation	.	.	.
Alig confidence	.	.	.												.	.
Template Conservation															.	.
Template Sequence	Y	G	I	S	E	G	L	V	R	L	S	V	G	L	.	.	E	D	I	D	D	L	L	A	D	V	Q	Q	A	L	K	A	S
Template Known Secondary structure	T	T			T	T								S	.	.	S
Template Predicted Secondary structure															.	.
Template SS confidence
	367	.	.	370	.	.	.	.	.	.	.	.	.	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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