Job Description P23256 Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012 Rank 54 Aligned Residues 356 % Identity 14% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																			.	.	.	.	.																															.
Query SS confidence																			.	.	.	.	.																															.
Query Sequence		Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	.	.	.	.	.	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G
Query Conservation																			.	.	.	.	.																															.
Alig confidence																			.	.	.	.	.																															.																			.
Template Conservation																																																																									.
Template Sequence		A	D	A	K	E	N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	.	G	H	I	R	S	I	A	T
Template Known Secondary structure									G	G	G						S	S			B		T	T	S		B												T								S				T	T															G	G	G			S	.	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	.	.	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P
Query Conservation																																																											.	.
Alig confidence																																																											.	.
Template Conservation
Template Sequence		A	G	G	T	G	G	I	H	H	L	I	H	N	Y	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P
Template Known Secondary structure		S														S		T	T							S	S			T									T	T								S	B		T	T	S	S	B																	S									S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
			172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																						.	.	.	.	.	.																																	.	.	.	.	.
Query SS confidence		.																						.	.	.	.	.	.																																	.	.	.	.	.
Query Sequence		.	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	.	.	.	.	.	.	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	.	.	.	.	.	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A
Query Conservation		.																						.	.	.	.	.	.																																	.	.	.	.	.
Alig confidence		.																						.	.	.	.	.	.																																	.	.	.	.	.
Template Conservation
Template Sequence		G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G
Template Known Secondary structure		S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T									S	T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.								.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																						.	.	.	.	.	.	.
Query SS confidence										.	.	.																																						.	.	.	.	.	.	.
Query Sequence		L	T	G	A	Y	G	I	I	.	.	.	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	.	.	.	.	.	.	.	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A
Query Conservation										.	.	.																																						.	.	.	.	.	.	.
Alig confidence										.	.	.																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V
Template Known Secondary structure		S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A
Query Conservation																																																														.
Alig confidence		.	.																			.	.	.	.													.								.	.	.	.	.	.	.										.
Template Conservation		.	.																			.	.	.	.													.								.	.	.	.	.	.	.
Template Sequence		.	.	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	.	.	.	.	S	A	N	A	I	C	E	E	L	K	K	E	.	H	I	Y	V	I	A	L	.	.	.	.	.	.	.	A	N	G	I	R	I	A	A	C	G	I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X	K	S
Template Known Secondary structure		.	.	T								S	S	S							T	.	.	.	.	T											T	.	T							.	.	.	.	.	.	.	S	S						G	G	G	S						T	T
Template Predicted Secondary structure		.	.																			.	.	.	.													.								.	.	.	.	.	.	.
Template SS confidence
				346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.								.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		389	390
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		412	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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