Job Description P23256 Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012 Rank 70 Aligned Residues 374 % Identity 11% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.		.	.	.	70	.
Predicted Secondary structure																																						.	.	.								.	.														.	.	.											.
Query SS confidence																																						.	.	.								.	.														.	.	.											.
Query Sequence		M	F	D	F	S	K	V	V	D	R	H	G	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	.	.	.	D	M	D	F	A	T	A	.	.	P	C	I	I	E	A	L	N	Q	R	L	M	H	.	.	.	G	V	F	G	Y	S	R	W	K	N	.	D	E	F	L	A
Query Conservation																																						.	.	.								.	.														.	.	.											.
Alig confidence																																						.	.	.								.	.														.	.	.											.
Template Conservation
Template Sequence		M	S	V	F	S	G	F	P	A	S	P	P	D	A	I	L	N	L	T	V	L	Y	N	A	D	T	N	P	K	K	V	N	L	G	V	G	A	Y	R	D	E	S	G	K	P	W	I	L	P	A	V	K	E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	P	L	F	L	E
Template Known Secondary structure				T	T	T	T								T	T													T	T					S	S						T	T	S																	S		T	T	T	S			S				T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																					.	.																		.	.																								.	.	.	.
Query SS confidence																					.	.																		.	.																								.	.	.	.
Query Sequence		A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	.	.	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	.	.	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	.	.	.	.	N	Q	R	T	V	M	P	V	A	L	E	K	Q
Query Conservation																					.	.																		.	.																								.	.	.	.
Alig confidence																					.	.																		.	.																								.	.	.	.
Template Conservation
Template Sequence		A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S	L	H	I	G	F	E	F	L	H	L	W	M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K
Template Known Secondary structure										T	T						T	T								S																		T	T							S	S			T												T	T	T	S								B		T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.
Predicted Secondary structure																							.	.																																																.	.	.	.
Query SS confidence																							.	.																																																.	.	.	.
Query Sequence		A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	.	.	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	.	.	.	.	Q	P	H	I	P	W
Query Conservation																							.	.																																																.	.	.	.
Alig confidence																							.	.																																																.	.	.	.
Template Conservation
Template Sequence		D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A	C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M
Template Known Secondary structure		T	S		S	S	B												S		T	T							S	S	S		T	T	T																				T								S		T	T	T	S	S	S						T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.													.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R
Template Known Secondary structure						T										T	T	T	S			G	G	G											S		S	S	S																					T	T	T	S	S														T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
							285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.								.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure		.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	.	.	.	.	.	.	.	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P
Query Conservation		.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																													.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence		L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L	H	A	S	L	A	K	R	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T	G	L	.	.	.	.	.	.	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K
Template Known Secondary structure																															T	T				S	T	T	T	T			T							S	S							.	.	.	.	.	.																	B	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.							.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation																			.
Alig confidence					.	.	.	.	.	.	.	.	.						.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		A	G	G	.	.	.	.	.	.	.	.	.	R	M	S	M	C	G	L	T	E	S	N	C	D	Y	V	A	E	A	I	H	D	A	V	T	K	L
Template Known Secondary structure		G	G	G	.	.	.	.	.	.	.	.	.				G	G	G			T	T	T															S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		395	.	.										.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.