Job Description P23256 Confidence 99.96% Date Thu Jan 5 11:39:19 GMT 2012 Rank 122 Aligned Residues 331 % Identity 13% Template c3mafB_ PDB info PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) Resolution 2.97 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.									.	110	.
Predicted Secondary structure																										.																									.	.																			.	.	.	.	.	.	.	.
Query SS confidence																										.																									.	.																			.	.	.	.	.	.	.	.
Query Sequence		A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	.	.	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	.	.	.	.	.	.	.	.	E	T	G
Query Conservation																										.																									.	.																			.	.	.	.	.	.	.	.
Alig confidence																										.																									.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	F	L	N	E	V	Y	A	L	Q	S	Q	S	N	P	L	H	P	D	L	W	P	S	T	A	K	F	E	A	E	V	V	A	M	T	A	H	M	L	G	G	D	A	A	G	G	T	V	C	G	T	V	T	S	G	G	T	E	S	L	L	L	A	M	K	T	Y	R	D	W	A	R	A	T	K	G	I	T	A
Template Known Secondary structure													T	T			T	T		T	T	T																			T	T	T	T	T	T	T	S								S	S																							S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C
Query Conservation
Alig confidence																																		.	.	.																	.																		.	.	.
Template Conservation																																		.	.	.																	.																		.	.	.
Template Sequence		P	E	A	V	V	P	V	S	A	H	A	A	F	D	K	A	A	Q	Y	F	G	I	K	L	V	R	T	P	L	D	A	D	.	.	.	Y	R	A	D	V	A	A	M	R	E	A	I	T	P	N	T	.	V	V	V	A	G	S	A	P	G	Y	P	H	G	V	V	D	P	.	.	.	I	P	E	I	A	A	L	A
Template Known Secondary structure								T	T	S		T										T								B		T	T	.	.	.	S	S	B											T	T		.							T	T		T	T	T						.	.	.
Template Predicted Secondary structure																																		.	.	.																	.																		.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																					.	.	.	.																																																			.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																																																			.	.	.	.	.	.	.
Query Sequence		E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	.	.	.	.	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.																																																			.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	H	G	I	G	C	H	V	D	A	C	L	G	G	F	I	L	P	W	A	E	R	L	G	Y	P	V	P	P	F	D	F	R	L	E	G	V	T	S	V	S	A	D	T	H	K	Y	G	Y	G	A	K	G	T	S	V	I	L	Y	R	R	P	D	L	L	H	Y	Q	Y	F	I	A	A	D	W	P	G	G	L
Template Known Secondary structure					T								T	T	T	T	T	T						T	T	T							S	T	T	S	T	T								T	T	T	T	T				S	S							S	S												S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
				261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L
Query Conservation		.	.
Alig confidence		.	.																																																	.														.	.	.
Template Conservation																																																				.														.	.	.
Template Sequence		Y	F	S	P	T	F	A	G	S	R	P	G	A	L	S	A	T	A	W	A	A	M	L	S	L	G	E	E	G	Y	L	D	A	T	R	R	I	L	Q	A	A	D	R	L	K	A	G	V	R	A	.	I	P	S	L	K	I	L	G	D	P	L	W	V	.	.	.	I	A	V	A	S	D	E	L	N	I	Y	Q	V
Template Known Secondary structure					S	S	S		S	S																																									T	.	S	T	T				S	S			S	S		.	.	.						S	S	S
Template Predicted Secondary structure																																																				.														.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	.	.	.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V	R
Query Conservation																																	.	.	.
Alig confidence									.										.	.	.	.	.										.	.	.
Template Conservation									.										.	.	.	.	.
Template Sequence		M	E	E	M	A	G	R	.	G	W	R	L	N	G	L	H	R	.	.	.	.	.	P	P	A	F	H	V	A	L	T	L	R	H	T	E	P	G	V	V	D	R	F	L	A	D	L	Q	D	A	V	A	Q	V	R
Template Known Secondary structure								T	.	T							T	T	.	.	.	.	.	T	T								G	G	G	S	S	T	T
Template Predicted Secondary structure									.										.	.	.	.	.
Template SS confidence
		421	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.						.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions