Job Description P23256 Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012 Rank 56 Aligned Residues 368 % Identity 13% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.																									.							.
Query SS confidence																																			.	.	.	.	.																									.							.
Query Sequence		F	S	K	V	V	D	R	H	G	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	.	.	.	.	.	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	.	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W
Query Conservation																																			.	.	.	.	.																									.							.
Alig confidence																																			.	.	.	.	.																									.							.
Template Conservation
Template Sequence		L	S	S	L	E	N	I	E	V	D	N	I	L	K	T	A	R	E	F	K	E	D	T	C	E	E	K	I	N	L	S	I	G	V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L
Template Known Secondary structure		G	G	G																	T	T	S	S		S	S					S		S	S		B		T	T	S	S	B																								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																.	.																						.
Query SS confidence																.	.																						.
Query Sequence		F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	.	.	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	.	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K
Query Conservation																.	.																						.
Alig confidence																.	.																						.																																	.
Template Conservation																																																																								.
Template Sequence		I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F	V	L	L	E	F	L	K	M	L	N	V	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	.	N	L	I	D	I	N	Y	D	L
Template Known Secondary structure					S	S		T	T	T	T	T	T																							T	T	T								S	S											T	T	T											T	.	T	T	T
Template Predicted Secondary structure																																																																								.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.
		154	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure							.	.																																																						.	.	.	.
Query SS confidence							.	.																																																						.	.	.	.
Query Sequence		L	E	A	V	L	.	.	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	.	.	.	.	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L
Query Conservation							.	.																																																						.	.	.	.
Alig confidence							.	.																																																						.	.	.	.
Template Conservation
Template Sequence		F	L	N	D	L	R	N	I	P	N	G	S	S	V	I	L	Q	I	S	C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V
Template Known Secondary structure									S		S	S								S	S		T	T	T																												S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.					.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.																											.	.	.	.	.	.
Query SS confidence																																	.	.	.	.																											.	.	.	.	.	.
Query Sequence		L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	.	.	.	.	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	.	.	.	.	.	.	A	P	W	L	D	A	L	R	I	Y	L	K	D
Query Conservation																																	.	.	.	.																											.	.	.	.	.	.
Alig confidence																																	.	.	.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		C	Q	S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H	I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N
Template Known Secondary structure						T	T	T	S			T	T	T	T									S	S																	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.							.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370
Predicted Secondary structure																	.	.	.	.	.	.																																																										.
Query SS confidence																	.	.	.	.	.	.																																																										.
Query Sequence		N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	.	.	.	.	.	.	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	.	C
Query Conservation																	.	.	.	.	.	.																																																										.
Alig confidence																	.	.	.	.	.	.																			.	.	.	.	.	.							.												.	.	.	.	.	.	.	.	.	.						.
Template Conservation																																									.	.	.	.	.	.							.												.	.	.	.	.	.	.	.	.	.
Template Sequence		N	R	I	L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	.	.	.	.	K	I	A	E	H	L	.	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	.	.	.	.	.	.	R	I	N	V	S	G	I
Template Known Secondary structure														G	G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	.	.	.	.	.	.	G	G	T	T	T	T	.	T	T	T	T					T	T	S	.	.	.	.	.	.	.	.	.	.				G	G	G
Template Predicted Secondary structure																																									.	.	.	.	.	.							.												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.							.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.											380	.	.	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	N	N	V	D	Y	I	A	D	K	I	C	L	S	L	S	Q	I
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions