Job Description P23256 Confidence 99.94% Date Thu Jan 5 11:39:19 GMT 2012 Rank 154 Aligned Residues 327 % Identity 13% Template c3ju7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution Resolution 2.19 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.
Predicted Secondary structure																						.																																																			.
Query SS confidence																						.																																																			.
Query Sequence		M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	.	V	F	G	Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	.	S	E	T	G	E	G	V	V
Query Conservation																						.																																																			.
Alig confidence																						.						.														.	.	.	.	.	.																										.
Template Conservation																												.														.	.	.	.	.	.
Template Sequence		A	S	T	V	P	V	I	E	Y	L	D	E	L	K	E	I	D	A	S	H	I	Y	T	N	Y	G	.	P	I	N	Q	R	F	E	Q	T	I	X	S	G	.	.	.	.	.	.	F	F	Q	N	R	G	A	V	T	T	V	A	N	A	T	L	G	L	X	A	A	I	Q	L	K	K	R	K	K	G	K	Y	A	L
Template Known Secondary structure							G	G	G	T											T			S	S	S		.														.	.	.	.	.	.	T	S	T	T		S						S														S		T	T
Template Predicted Secondary structure																												.														.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.							.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G
Query Conservation
Alig confidence																															.	.																																		.	.	.	.										.
Template Conservation																															.	.																																		.	.	.	.										.
Template Sequence		X	P	S	F	T	F	P	A	T	P	L	A	A	I	W	C	G	L	E	P	Y	F	I	D	I	S	I	D	D	.	.	W	Y	X	D	K	T	V	L	W	D	K	I	E	E	L	K	E	E	V	A	I	V	V	P	Y	A	T	F	G	S	W	X	N	.	.	.	.	L	E	E	Y	E	E	L	E	K	.	K	G
Template Known Secondary structure				S	S	S		T									T	T								B		T	T	T	.	.		S	B													G	G	G							B		T	T	T	B				.	.	.	.										.		T
Template Predicted Secondary structure																															.	.																																		.	.	.	.										.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.		.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260											.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	.	.	.	.	.	.	.	.	.	.	K	G	R	D	G
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																						.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.																						.
Template Sequence		V	P	V	V	V	D	A	A	P	G	F	G	L	X	N	G	G	X	H	Y	G	.	.	.	.	Q	D	F	S	G	X	I	I	Y	S	F	H	A	T	P	F	G	I	G	E	G	.	G	L	I	Y	S	K	N	E	E	D	I	Q	R	I	K	R	X	G	N	F	G	F	D	T	N	R	E	C	T	X	X	G	F
Template Known Secondary structure				B					T	T		T	T				T	T			T	T	.	.	.	.	T	T		S	S							B							B	S		.						S												T	B	T	T	B		T	T	S		B		S
Template Predicted Secondary structure																							.	.	.	.																						.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	C	K	X	S	E	Y	A	A	A	I	G	I	A	T	X	K	K	W	D	D	K	L	K	E	R	T	R	I	S	E	W	Y	K	Q	L	L	Q	S	N	G	L	X	K	K	G	W	Q	L	Q	K	T	E	A	V	I	Q	Q	F	X	P	I	L	C	P	E	E	V	R	N	K	Q	V	I	E	D	L	K	K	Q
Template Known Secondary structure		B																																							T	T	T	T	T	T	T		B					S		B			S	S							T	T	S												T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.																				.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	V	R	L	N	A	G	.	.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation		.
Template Sequence		.	K	I	E	A	R	L	Y	F	S	P	S	C	H	Q	Q	V	L	F	R	N	Y	K	S	T	D	L	T	R	T	N	K	I	A	K	R	I	V	S	L	P	L	W	E	G	X	T	K	E	I	V	E	Q	I	V	I	C	L	G	Q
Template Known Secondary structure		.	T	B			B		T	T	S	S		G	G	G	S	G	G	G	T	T	S		B	S																			T	T
Template Predicted Secondary structure		.
Template SS confidence
			311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions