Job Description P23256 Confidence 99.90% Date Thu Jan 5 11:39:19 GMT 2012 Rank 195 Aligned Residues 360 % Identity 12% Template c3i5tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 Resolution 2.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.							.
Query SS confidence																												.	.							.
Query Sequence		H	G	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	.	.	D	M	D	F	A	T	.	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S
Query Conservation																												.	.							.
Alig confidence												.	.	.	.	.												.	.							.																																												.	.
Template Conservation												.	.	.	.	.																																																																.	.
Template Sequence		H	A	E	G	I	Y	V	H	T	E	.	.	.	.	.	D	G	R	R	L	I	D	G	P	A	G	M	W	C	A	Q	V	G	Y	G	R	R	E	I	V	D	A	M	A	H	Q	A	M	V	L	P	Y	A	S	P	W	Y	M	A	T	S	P	A	A	R	L	A	E	K	I	A	T	L	T	P	G	D	L	.	.
Template Known Secondary structure					B	T					T	.	.	.	.	.	T							T	T					T		T	T		B																					T	T	T															T	T	S	S	T	T		.	.
Template Predicted Secondary structure												.	.	.	.	.																																																																.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110									.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	.	.	.	.	.	.	.	.	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	R	I	F	F	T	T	G	G	S	T	A	V	D	S	A	L	R	F	S	E	F	Y	N	N	V	L	G	R	P	Q	K	K	R	I	I	V	R	Y	D	G	Y	H	G	S	T	A	L	T	A	A	C	T	G	R	T	G	N	W	P	N	F	D	I	A	Q	D	R	I	S	F	L	S	S	P	N	P	R	H	A
Template Known Secondary structure								S	S																			T	T		T	T								T	T					S	S						T				G	G	G		T	T	S					T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
														147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	R	S	Q	E	A	F	L	D	D	L	V	Q	E	F	E	D	R	I	E	S	L	G	P	D	T	I	A	A	F	L	A	E	P	I	L	A	S	G	G	V	I	I	P	P	A	G	Y	H	A	R	F	K	A	I	C	E	K	H	D	I	L	Y	I	S	D	E	V	V	T	G	F	G	R	C	G	E	W	F
Template Known Secondary structure		T	T	S																						G	G	G								S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.							260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	.	.	.	.	.	.	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L
Query Conservation																																															.	.	.	.	.	.
Alig confidence															.	.																															.	.	.	.	.	.
Template Conservation															.	.
Template Sequence		A	S	E	K	V	F	G	V	V	P	D	I	I	.	.	T	F	A	K	G	V	T	S	G	Y	V	P	L	G	G	L	A	I	S	E	A	V	L	A	R	I	S	G	E	N	A	K	G	S	W	F	T	N	G	Y	T	Y	S	N	Q	P	V	A	C	A	A	A	L	A	N	I	E	L	M	E	R	E	G	I	V
Template Known Secondary structure						T	T					S			.	.				G	G	G	G	T	T	S	S														T	T	S	G	G	G		T	T								T	T	T	T																		T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	.	.	.	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R
Query Conservation																																																.	.	.
Alig confidence																							.	.																								.	.	.												.									.	.	.	.	.	.	.
Template Conservation																							.	.																																						.									.	.	.	.	.	.	.
Template Sequence		D	Q	A	R	E	M	A	D	Y	F	A	A	A	L	A	S	L	R	D	L	P	.	.	G	V	A	E	T	R	S	V	G	L	V	G	C	V	Q	C	L	L	G	T	A	E	D	K	A	F	T	L	K	I	D	E	R	C	F	E	L	.	G	L	I	V	R	P	L	G	.	.	.	.	.	.	.	D	L	C	V
Template Known Secondary structure																	T	T	T	T	S	T	.	.	T								T	T																											T	.	T							T	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																							.	.																																						.									.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.								.	.	.	.
		366			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		L	.	.	N	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		I	S	P	P	L	I	I	S	R	A	Q	I	D	E	M	V	A	I	M	R	Q	A	I	T	E	V
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions