Job Description P23256 Confidence 99.90% Date Thu Jan 5 11:39:19 GMT 2012 Rank 198 Aligned Residues 358 % Identity 11% Template c3hmuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi Resolution 2.10 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																												.	.							.																									.
Query SS confidence																												.	.							.																									.
Query Sequence		H	G	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	.	.	D	M	D	F	A	T	.	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D
Query Conservation																												.	.							.																									.
Alig confidence												.	.	.	.	.												.	.							.																									.																			.	.
Template Conservation												.	.	.	.	.																																																																.	.
Template Sequence		R	A	R	G	V	W	L	N	D	S	.	.	.	.	.	E	G	E	E	I	L	D	A	M	A	G	L	W	C	V	N	I	G	Y	G	R	D	E	L	A	E	V	A	A	R	Q	M	R	E	L	P	Y	Y	N	T	F	F	K	T	T	H	V	P	A	I	A	L	A	Q	K	L	A	E	L	A	P	G	D	.	.
Template Known Secondary structure					B	T					T	.	.	.	.	.	T							T	T					T		T	T		B																	S				S	S	S	S																	S		T	T	.	.
Template Predicted Secondary structure												.	.	.	.	.																																																																.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.									110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	.	.	.	.	.	.	.	.	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	H	V	F	F	A	G	G	G	S	E	A	N	D	T	N	I	R	M	V	R	T	Y	W	Q	N	K	G	Q	P	E	K	T	V	I	I	S	R	K	N	A	Y	H	G	S	T	V	A	S	S	A	L	G	G	M	A	G	M	H	A	Q	S	G	L	I	P	D	V	H	H	I	N	Q	P	N	W	W	A	E
Template Known Secondary structure									S	S																			T	T		T	T								T	T					S	S							S								T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
													149	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	C	D	M	G	K	L	E	A	V	L	.	.	.	.	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation
Template Sequence		G	G	D	M	D	P	E	E	F	G	L	A	R	A	R	E	L	E	E	A	I	L	E	L	G	E	N	R	V	A	A	F	I	A	E	P	V	Q	G	A	G	G	V	I	V	A	P	D	S	Y	W	P	E	I	Q	R	I	C	D	K	Y	D	I	L	L	I	A	D	E	V	I	C	G	F	G	R	T	G	N	W
Template Known Secondary structure			T	T																							G	G	G								S	S	B	S	T	T	T		B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	.	.	A	P	W	L	D	A	L
Query Conservation																																																																									.	.
Alig confidence																.	.	.																			.																																				.	.
Template Conservation																.	.	.																			.
Template Sequence		F	G	T	Q	T	M	G	I	R	P	H	I	M	T	.	.	.	I	A	K	G	L	S	S	G	Y	A	P	I	G	G	S	I	V	C	.	D	E	V	A	H	V	I	G	K	D	E	F	N	H	G	Y	T	Y	S	G	H	P	V	A	A	A	V	A	L	E	N	L	R	I	L	E	E	E	N	I	L	D	H	V
Template Known Secondary structure								T				S				.	.	.			G	G	G	T	T	T	S	S									.								T	T	S							T	T	T	T																		T	T
Template Predicted Secondary structure																.	.	.																			.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.												.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	.	.	.	.	.	.	.	.	.	.	.	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																								.	.	.	.	.	.	.	.	.	.	.												.								.	.	.	.	.	.	.
Template Conservation																				.	.																																														.								.	.	.	.	.	.	.
Template Sequence		R	N	V	A	A	P	Y	L	K	E	K	W	E	A	L	T	D	H	.	.	P	L	V	G	E	A	K	I	V	G	M	M	A	S	I	A	L	T	P	N	K	A	S	R	A	K	F	A	S	E	P	G	T	I	G	Y	I	C	R	E	R	C	F	A	N	.	N	L	I	M	R	H	V	.	.	.	.	.	.	.
Template Known Secondary structure				T											G	G	G	G	S	.	.	T	T								T	T								S		G	G	G	T			B	S	S		T	T													T	.	T	B						.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.																																														.								.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.
		361	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		R	G	F	V	R	L	N	.	.	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		G	D	R	M	I	I	S	P	P	L	V	I	T	P	A	E	I	D	E	M	F	V	R	I	R	K	S	L	D	E	A
Template Known Secondary structure		T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions