Job Description P23256 Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012 Rank 67 Aligned Residues 338 % Identity 15% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.						.	.	110	.	.	.
Predicted Secondary structure																																								.	.	.																													.	.	.	.	.
Query SS confidence																																								.	.	.																													.	.	.	.	.
Query Sequence		T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	.	.	.	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	.	.	.	.	.	S	E	T	G	E	G
Query Conservation																																								.	.	.																													.	.	.	.	.
Alig confidence																																								.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		N	R	D	K	V	V	A	E	W	V	N	G	A	V	A	N	N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K
Template Known Secondary structure																T		S			S	S	S	S																		T	T	T				G	G	G																							T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	.	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E
Query Conservation																																.
Alig confidence																																.																										.
Template Conservation																																																										.
Template Sequence		I	A	I	N	E	P	I	F	T	P	Y	L	R	I	P	E	L	K	D	Y	E	L	V	E	V	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D	P	S	I	K	A	L	I	V	V	.	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E
Template Known Secondary structure						S	S							T	S	G	G	G	G	G	S											T	T	T	T	S											S		T	T								.	S	S		T	T	T		B
Template Predicted Secondary structure																																																										.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		193	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure				.																																																																							.	.	.	.	.	.	.
Query SS confidence				.																																																																							.	.	.	.	.	.	.
Query Sequence		R	H	.	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	.	.	.	.	.	.	.
Query Conservation				.																																																																							.	.	.	.	.	.	.
Alig confidence				.																										.	.	.												.																															.	.	.	.	.	.	.
Template Conservation																														.	.	.												.
Template Sequence		K	N	P	K	L	X	I	I	S	D	E	V	Y	G	A	F	V	P	N	F	K	S	I	Y	S	V	V	P	.	.	.	Y	N	T	X	L	V	Y	S	Y	S	L	.	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R
Template Known Secondary structure				T	T								T	T	G	G	G	S	T	T								S	G	.	.	.	G	G										.		S		G	G	G									S	S									T	S
Template Predicted Secondary structure																														.	.	.												.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.				.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
																																265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.								.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	.	.	.	.	.	.	.	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	S	V	V	L	D	P	D	K	X	K	F	I	D	R	L	C	A	D	S	R	S	I	G	L	Y	H	T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q
Template Known Secondary structure				T	T		S		G	G	G												T	T	T	T	T	G	G	G		S																		T	T		B	G	G	G	T	B																							T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.																.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Query Sequence		A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	.	C	P
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Alig confidence		.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.												.
Template Conservation		.	.	.																																																															.
Template Sequence		.	.	.	A	P	K	D	E	T	D	T	N	T	H	Y	Y	S	L	I	D	I	Y	R	L	A	E	K	I	Y	G	K	E	F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	G	.	A	K	P	G	E	L	R	V	S	Q	A	N	L	P
Template Known Secondary structure		.	.	.						S	T	T	B			S																																							T	T	S	S	S		T	T					.	S	S	T	T						S	S	S	S
Template Predicted Secondary structure		.	.	.																																																															.
Template SS confidence
					431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	D	Y	A	L	I	G	K	Q	V	L	E	L	L	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions