Job Description P23256 Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012 Rank 52 Aligned Residues 355 % Identity 13% Template c3ez1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution Resolution 2.60 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60									.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.							.
Query SS confidence																																												.	.	.	.	.	.	.	.							.
Query Sequence		D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	.	.	.	.	.	.	.	.	Y	S	R	W	K	N	.	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T
Query Conservation																																												.	.	.	.	.	.	.	.							.
Alig confidence																																												.	.	.	.	.	.	.	.							.													.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.
Template Sequence		Q	A	Y	E	A	F	K	A	R	G	L	N	L	N	X	Q	R	G	Q	P	A	D	A	D	F	D	L	S	N	G	L	L	T	V	L	G	A	E	D	V	R	X	D	G	L	D	L	R	N	Y	P	G	G	V	A	G	L	P	S	A	R	A	L	F	A	G	Y	L	D	.	.	.	.	.	.	V	K	A	E	N
Template Known Secondary structure											T					S												T	T	G	G	G	G	G	S			G	G	G				T	T			T	T	S	S		S		T	T													T	T	.	.	.	.	.	.	S		G	G	G
Template Predicted Secondary structure																																																																							.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.														.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		V	L	V	W	N	N	S	S	L	E	L	Q	G	L	V	L	T	F	A	L	L	H	G	V	R	G	S	T	G	P	W	L	S	Q	T	P	K	X	I	V	T	V	P	G	Y	D	R	H	F	L	L	L	Q	T	L	G	F	E	L	L	T	V	D	X	Q	S	D	G	.	.	.	.	P	D	V	D	A	V	E	R
Template Known Secondary structure						S	S																T			T	T		S	S		G	G	G	G									S													T										T	T		.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.
		157	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.									.	.	220	.	.	.	.	.
Predicted Secondary structure								.	.																													.																												.	.	.	.	.	.	.	.
Query SS confidence								.	.																													.																												.	.	.	.	.	.	.	.
Query Sequence		V	L	A	K	P	E	.	.	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	.	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	.	.	.	.	.	.	.	.	S	N	V	A	R	G	D	W
Query Conservation								.	.																													.																												.	.	.	.	.	.	.	.
Alig confidence								.	.																													.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	G	T	D	P	S	V	K	G	I	L	F	V	P	T	Y	S	N	P	G	G	E	T	I	S	L	E	K	A	R	R	L	A	G	L	Q	A	A	A	P	D	F	T	I	F	A	D	D	A	Y	R	V	H	H	L	V	E	E	D	R	A	E	P	V	N	F	V	V	L	A	R	D	A	G	Y	P	D	R	A
Template Known Secondary structure					S		T	T								S	S	S		T	T	T														T				S	S	T	T								T	T	S	S		B			S	S	S															T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	.	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D
Query Conservation																																																									.
Alig confidence													.																																												.
Template Conservation													.
Template Sequence		F	V	F	A	S	T	S	K	I	T	F	.	A	G	A	G	L	G	F	V	A	S	S	E	D	N	I	R	W	L	S	K	Y	L	G	A	Q	S	I	G	P	N	K	V	E	Q	A	R	H	V	K	F	L	T	E	Y	P	G	G	L	E	G	L	X	R	D	H	A	A	I	I	A	P	K	F	R	A	V	D	E
Template Known Secondary structure							S	T	T	T	S		.	S	S	S	S																					S		S																	S	T	T
Template Predicted Secondary structure													.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		305	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.
Predicted Secondary structure							.	.	.	.																																																.	.	.	.														.
Query SS confidence							.	.	.	.																																																.	.	.	.														.
Query Sequence		K	M	N	A	A	.	.	.	.	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	.	.	.	.	G	E	E	G	R	G	F	V	R	L	N	A	G	.	C	P	R	S	K	L
Query Conservation							.	.	.	.																																																.	.	.	.														.
Alig confidence							.	.	.	.																						.	.														.											.	.	.	.														.
Template Conservation																																.	.														.
Template Sequence		V	L	R	A	E	L	G	E	G	G	E	Y	A	T	W	T	L	P	K	G	G	Y	F	I	S	L	D	T	A	E	.	.	P	V	A	D	R	V	V	K	L	A	E	A	A	.	G	V	S	L	T	P	A	G	A	T	Y	P	A	G	Q	D	P	H	N	R	N	L	R	L	A	P	T	R	P	P	V	E	E	V
Template Known Secondary structure								T	T	T	T	S	S							S	B	S	S							S	S	.	.	S												T	.	T						T	T	T	T	S	S	T	T			S	S	S								S	S	S
Template Predicted Secondary structure																																.	.														.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		376	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	G	V	A	G	L	I	N	A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	T	A	X	Q	V	V	A	A	C	I	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions