Job Description P23256 Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012 Rank 1 Aligned Residues 380 % Identity 30% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	F	S	K	V	V	D	R	H	G	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H
Query Conservation
Alig confidence							.														.	.	.	.	.																																							.
Template Conservation							.														.	.	.	.	.																																							.
Template Sequence		Y	D	F	T	H	.	V	P	K	R	Q	G	N	S	I	K	W	G	V	.	.	.	.	.	L	K	E	K	E	L	P	X	W	I	A	E	X	D	F	K	I	A	P	E	I	X	A	S	X	E	E	K	L	K	V	A	A	F	G	Y	E	S	.	V	P	A	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H
Template Known Secondary structure		S			S	S	.						T	T		T	T	T	T	T	.	.	.	.	.			T	T						S	S			S	S															T	T								.
Template Predicted Secondary structure							.														.	.	.	.	.																																							.
Template SS confidence
		6	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.						.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	R	P	K	E	D	W	C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	R	Q	F	T	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	G	R	R	V	I	S	S	D	L	I	Y	E	N	S	K	Y	S	V	N	W	A	D	L	E	E	K	L	A	T	P
Template Known Secondary structure		S					G	G	G					S														S		T	T							S	S			T								T	T	T												T	T														T	S	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	.	.	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		S	V	R	X	X	V	F	C	N	P	H	N	P	I	G	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D	W	D	A	K	N	W	V	V	S	L	I	S	P	S	T	F	N	L	A	A
Template Known Secondary structure		T								S	S	B	T	T	T	T	B																	T	T								T	T	G	G	G	B		S	S						G	G	G	S		T	T	G	G	G	G											S		G	G
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	E	S	F	F	L	A	G	I	G	E	P	.	N	L	L	A	I	P	A	A	I	A	A	Y	E	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A	Y	A	R	E	F	L	A	K	E	V	P	E	V	K	V	L	D	S	N
Template Known Secondary structure		G									S															T		S	S		.		T	T																																							T	T	S						S
Template Predicted Secondary structure																															.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	N	G	H	E	F	V	R	I	N	L	A	C	P	K	E	L	V	I	D	G	X	Q	R	L	K	Q	G	V	L	N	L
Template Known Secondary structure		B	S	S							G	G	G		S																				G	G	G	G		T	T	G	G	G								S																		T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions