Job Description P23256 Confidence 99.96% Date Thu Jan 5 11:39:19 GMT 2012 Rank 130 Aligned Residues 343 % Identity 13% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		18	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.											.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure											.	.																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		W	D	Y	V	A	D	R	F	G	.	.	T	A	D	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	D	.	.	.	.	.	.	.	.	.	.	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I
Query Conservation											.	.																																										.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.														.																	.											.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																										.																	.																																.	.	.	.	.	.
Template Sequence		V	A	R	V	R	G	L	H	P	S	L	G	D	G	W	V	H	F	D	A	P	A	G	M	.	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	.	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	.	.	.	.	.	.	A
Template Known Secondary structure								T		T	T	T	T	S	S					B	G	G	G			.																	.			S	S	S		S	S	S																						T	.	.	.	.	.	.
Template Predicted Secondary structure																										.																	.																																.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																.	.	.	.
Query SS confidence																								.	.	.																.	.	.	.
Query Sequence		D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	.	.	.	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	.	.	.	.	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L
Query Conservation																								.	.	.																.	.	.	.
Alig confidence																								.	.	.																.	.	.	.																						.	.
Template Conservation																																																																			.	.
Template Sequence		D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	.	.	T	G	E	L	P	T	W	Q	W	E	S	L	I
Template Known Secondary structure			G	G	G					S													T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	.	.	T					G	G	G
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P
Query Conservation
Alig confidence																							.	.	.	.																																.	.	.	.	.	.
Template Conservation																							.	.	.	.																																.	.	.	.	.	.
Template Sequence		S	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	V	T	D	.	.	.	.	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	I	R	.	.	.	.	.	.	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P
Template Known Secondary structure			T	T								S	B		T	T	T		B	B			.	.	.	.											T	T								T	T	T	T	T	T							.	.	.	.	.	.					S						G	G	G	G	T	S		S
Template Predicted Secondary structure																							.	.	.	.																																.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	T	G	A	Y	G	I	I	E	N	S	S	S	.	.	.	.	.	.	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D
Query Conservation																.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.												.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.
Template Sequence		I	.	.	G	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R
Template Known Secondary structure			.	.						S							T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure			.	.
Template SS confidence
		225			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.								.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.														.
Query SS confidence																																																													.	.	.	.	.	.	.														.
Query Sequence		N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	.	.	.	.	.	.	.	G	E	E	G	R	G	F	V	R	L	N	A	G	.
Query Conservation																																																													.	.	.	.	.	.	.														.
Alig confidence													.																																		.														.	.	.	.	.	.	.														.
Template Conservation													.																																		.
Template Sequence		V	F	D	Y	L	M	V	S	L	R	S	.	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	A	D	R	V	V	Q	R	L	.	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H
Template Known Secondary structure												T	.		T	T								S	S	B		S							T	T	B										.			T	T								S								T	T	T	T	T	T									T
Template Predicted Secondary structure													.																																		.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		Y	S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S
Template Known Secondary structure		T															T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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