Phyre 2 alignment of P23256 with c3a2bA

Job Description P23256
Confidence 100.00% Date Thu Jan 5 11:39:19 GMT 2012

Rank 95 Aligned Residues 341

% Identity 11% Template c3a2bA_

PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure											.																									.	.	.	.
Query SS confidence											.																									.	.	.	.
Query Sequence	D	L	L	P	F	T	I	S	D	M	.	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	.	.	.	.	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L
Query Conservation											.																									.	.	.	.
Alig confidence											.																									.	.	.	.																						.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence	R	V	L	M	F	G	S	N	S	Y	L	G	L	T	T	D	T	R	I	I	K	A	A	Q	D	A	L	E	K	Y	G	T	G	C	A	G	S	R	F	L	N	G	T	L	D	I	H	V	E	L	E	E	K	L	S	A	Y	V	G	K	.	.	.	.	E	A	A	I	L	F	S	T	G	F	Q	S	N	L	G	P
Template Known Secondary structure						S		S		T	T		G	G	G																	S				S	B	T	T	T	T																		T		.	.	.	.	S						S	S
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
	45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E
Query Conservation
Alig confidence																																									.	.	.	.	.																																	.	.	.
Template Conservation																																									.	.	.	.	.																																	.	.	.
Template Sequence	L	S	C	L	M	G	R	N	D	Y	I	L	L	D	E	R	D	H	A	S	I	I	D	G	S	R	L	S	F	S	K	V	I	K	Y	G	H	N	N	M	.	.	.	.	.	E	D	L	R	A	K	L	S	R	L	P	E	D	S	A	K	L	I	C	T	D	G	I	F	S	M	E	G	D	I	V	N	.	.	.
Template Known Secondary structure				S	S		T	T							T	T												S	S	S							T	T			.	.	.	.	.									T	S		S	S	S								S	B		T	T	T			B			.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.																																	.	.	.
Template SS confidence
	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R
Query Conservation
Alig confidence																																																									.	.
Template Conservation																																																									.	.
Template Sequence	L	P	E	L	T	S	I	A	N	E	F	D	A	A	V	M	V	D	D	A	H	S	L	G	V	I	G	H	K	G	A	G	T	A	S	H	F	G	L	N	D	D	V	D	L	I	M	G	T	F	S	K	S	L	A	S	.	.	L	G	G	F	V	A	G	D	A	D	V	I	D	F	L	K	H	N	A	R	S	V
Template Known Secondary structure												T								T	T	T	T	T	T	S	S	G	G	G								T		G	G	G		S						S	S	S	T	T		S	.	.	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
	193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I
Query Conservation
Alig confidence																																																	.	.	.	.																.
Template Conservation																																																	.	.	.	.																.
Template Sequence	M	F	S	A	S	M	T	P	A	S	V	A	S	T	L	K	A	L	E	I	I	Q	N	E	P	E	H	I	E	K	L	W	K	N	T	D	Y	A	K	A	Q	L	L	D	H	G	F	D	.	.	.	.	L	G	A	T	E	S	P	I	L	P	I	F	I	R	S	.	N	E	K	T	F	W	V	T	K	M	L	Q
Template Known Secondary structure		S	S	B																					T																				T	T			.	.	.	.	B		S			S	S									.
Template Predicted Secondary structure																																																	.	.	.	.																.
Template SS confidence
	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.					.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.

	344	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.													.	.
Query SS confidence															.													.	.
Query Sequence	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	.	E	E	G	R	G	F	V	R	L	N	A	G	.	.	C	P	R	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V
Query Conservation															.													.	.
Alig confidence			.												.													.	.
Template Conservation			.
Template Sequence	D	D	.	G	V	F	V	N	P	V	V	S	P	A	V	P	A	E	E	S	L	I	R	F	S	L	M	A	T	H	T	Y	D	Q	I	D	E	A	I	E	K	M	V	K	V	F	K	Q	A
Template Known Secondary structure		T	.	T								T	T	T	S		G	G	G									T	T
Template Predicted Secondary structure			.
Template SS confidence
	346	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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