Phyre 2 alignment of P23256 with c1oatB

Job Description P23256
Confidence 99.96% Date Thu Jan 5 11:39:19 GMT 2012

Rank 135 Aligned Residues 361

% Identity 14% Template c1oatB_

PDB info PDB header:aminotransferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.						.
Query SS confidence																																				.	.						.
Query Sequence	F	D	F	S	K	V	V	D	R	H	G	T	W	C	T	Q	W	D	Y	V	A	D	R	F	G	T	A	D	L	L	P	F	T	I	S	.	.	D	M	D	F	A	.	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S
Query Conservation																																				.	.						.
Alig confidence												.								.	.	.	.	.												.	.						.																						.
Template Conservation												.								.	.	.	.	.																																									.
Template Sequence	H	P	L	P	V	A	L	E	R	G	K	.	G	I	Y	L	W	D	V	.	.	.	.	.	E	G	R	K	Y	F	D	F	L	S	S	Y	S	A	V	N	Q	G	H	C	H	P	K	I	V	N	A	L	K	S	Q	V	D	K	L	T	L	T	S	R	.	A	F	Y	N	N	V	L	G	E	Y	E	E	Y	I	T
Template Known Secondary structure				S								.	B	T					T	.	.	.	.	.	T							S	S					T		T	T		B	T													T	T		S				T	.	T	S			S	S
Template Predicted Secondary structure												.								.	.	.	.	.																																									.
Template SS confidence
	56	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.												.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	.	.	.	.	.	.	.	.	.	.	.	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.
Template Sequence	K	L	F	N	Y	.	.	.	.	H	K	V	L	P	M	N	T	G	V	E	A	G	E	T	A	C	K	L	A	R	K	W	G	Y	T	V	K	G	I	Q	K	Y	K	A	K	I	V	F	A	A	G	N	F	W	G	R	T	L	S	A	I	S	S	S	T	D	P	T	S	Y	D	G	F	G	P	F	M	P	G	F
Template Known Secondary structure				T		.	.	.	.	S						S	S																			T	T				T	T								T	T					S	S					T	T								T	T	S		S			S	S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
	129	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	148					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.																							.
Query SS confidence		.	.	.	.																							.
Query Sequence	F	.	.	.	.	C	D	M	G	K	L	E	A	V	L	A	K	P	E	C	K	I	M	L	L	C	S	.	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R
Query Conservation		.	.	.	.																							.
Alig confidence		.	.	.	.																							.
Template Conservation
Template Sequence	D	I	I	P	Y	N	D	L	P	A	L	E	R	A	L	Q	D	P	N	V	A	A	F	M	V	E	P	I	Q	G	E	A	G	V	V	V	P	D	P	G	Y	L	M	G	V	R	E	L	C	T	R	H	Q	V	L	F	I	A	D	E	I	Q	T	G	L	A	R	T	G	R	W	L	A	V	D	Y	E	N	V	R
Template Known Secondary structure					T	T									T	T	S	T	T								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	D	W	A	L	L	T	S	G	S	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I
Query Conservation
Alig confidence					.	.	.																				.	.	.	.	.
Template Conservation					.	.	.																				.	.	.	.	.
Template Sequence	P	D	I	V	.	.	.	L	L	G	K	A	L	S	G	G	L	Y	P	V	S	A	V	L	C	D	.	.	.	.	.	D	D	I	M	L	T	I	K	P	G	E	H	G	S	T	Y	G	G	N	P	L	G	C	R	V	A	I	A	A	L	E	V	L	E	E	E	N	L	A	E	N	A	D	K	L	G	I	I	L
Template Known Secondary structure		S			.	.	.				G	G	G	G	T	T	S	S									.	.	.	.	.					T	T	S		T	T	S	S			S	S	T	T																		T	T
Template Predicted Secondary structure					.	.	.																				.	.	.	.	.
Template SS confidence
	285	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

	303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.																																						.	.
Query SS confidence																												.																																						.	.
Query Sequence	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	.	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	.	.	N	A	G	C	P	R	S	K	L	E	K	G	V
Query Conservation																												.																																						.	.
Alig confidence																												.																	.								.	.	.	.	.	.								.	.
Template Conservation																																													.								.	.	.	.	.	.
Template Sequence	R	N	E	L	M	K	L	P	S	D	V	V	T	A	V	R	G	K	G	L	L	N	A	I	V	I	K	E	T	K	D	W	D	A	W	K	V	C	L	R	L	R	D	N	.	G	L	L	A	K	P	T	.	.	.	.	.	.	H	G	D	I	I	R	F	A	P	P	L	V	I	K	E	D	E	L	R	E	S	I
Template Known Secondary structure					T	T	S		T	T	T								T	T									B	T	T	B												T	.	T					B	S	.	.	.	.	.	.	S	S	S								T	T
Template Predicted Secondary structure																																													.								.	.	.	.	.	.
Template SS confidence
	357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.							.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	G	L	I	N	A	I	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	I	I	N	K	T	I	L	S
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
	430	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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